Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm8723-201ENSMUST00000166076 820 ntBASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Gm8701-201ENSMUST00000169259 874 ntBASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Gm12857-201ENSMUST00000117678 592 ntBASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Cd55b-202ENSMUST00000119432 986 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Gm11205-201ENSMUST00000137738 431 ntTSL 5 BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Gm44270-201ENSMUST00000203084 1234 ntBASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Gm45594-201ENSMUST00000211717 241 ntBASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Olfr1047-201ENSMUST00000099901 960 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Scn4aQ9ER60 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Isg20-203ENSMUST00000120331 845 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Gm3551-201ENSMUST00000190750 664 ntBASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Gm5870-201ENSMUST00000196461 282 ntBASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Tmbim7-204ENSMUST00000198739 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Stt3a-209ENSMUST00000217599 285 ntTSL 5 BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 AC158388.3-202ENSMUST00000225517 775 ntBASIC17.55■□□□□ 0.4
Scn4aQ9ER60 CT573086.4-201ENSMUST00000226729 342 ntBASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Il1f5-205ENSMUST00000147885 1392 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Scn4aQ9ER60 Gm15003-201ENSMUST00000118884 446 ntBASIC17.54■□□□□ 0.4
Scn4aQ9ER60 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Scn4aQ9ER60 Gm43854-201ENSMUST00000200418 394 ntBASIC17.54■□□□□ 0.4
Scn4aQ9ER60 AI839979-201ENSMUST00000200738 654 ntTSL 2 BASIC17.54■□□□□ 0.4
Scn4aQ9ER60 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Scn4aQ9ER60 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Scn4aQ9ER60 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Scn4aQ9ER60 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC17.54■□□□□ 0.4
Scn4aQ9ER60 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
Scn4aQ9ER60 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Scn4aQ9ER60 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Scn4aQ9ER60 Gm5847-201ENSMUST00000178959 1595 ntBASIC17.54■□□□□ 0.4
Scn4aQ9ER60 Txnrd2-205ENSMUST00000126778 491 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Scn4aQ9ER60 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC17.54■□□□□ 0.4
Scn4aQ9ER60 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Scn4aQ9ER60 AC112146.1-201ENSMUST00000221641 733 ntTSL 3 BASIC17.54■□□□□ 0.4
Scn4aQ9ER60 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC17.54■□□□□ 0.4
Scn4aQ9ER60 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC17.54■□□□□ 0.4
Scn4aQ9ER60 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
Scn4aQ9ER60 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Scn4aQ9ER60 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC17.53■□□□□ 0.4
Scn4aQ9ER60 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn4aQ9ER60 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn4aQ9ER60 Gm28182-201ENSMUST00000188354 2477 ntBASIC17.53■□□□□ 0.4
Scn4aQ9ER60 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC17.53■□□□□ 0.4
Scn4aQ9ER60 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn4aQ9ER60 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn4aQ9ER60 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn4aQ9ER60 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC17.53■□□□□ 0.4
Scn4aQ9ER60 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Scn4aQ9ER60 AC136376.2-201ENSMUST00000228819 490 ntBASIC17.53■□□□□ 0.4
Scn4aQ9ER60 Hspb11-201ENSMUST00000046558 608 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn4aQ9ER60 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn4aQ9ER60 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC17.53■□□□□ 0.4
Scn4aQ9ER60 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn4aQ9ER60 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn4aQ9ER60 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn4aQ9ER60 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn4aQ9ER60 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn4aQ9ER60 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 56 ms