Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf220Q6PDX6 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf220Q6PDX6 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf220Q6PDX6 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Rnf220Q6PDX6 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf220Q6PDX6 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC12.55□□□□□ -0.4
Rnf220Q6PDX6 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Rbm6-207ENSMUST00000183032 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 AC126549.2-201ENSMUST00000223997 1976 ntBASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Gm45643-201ENSMUST00000211364 1484 ntBASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Gm44851-201ENSMUST00000205735 2309 ntBASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Gm20553-201ENSMUST00000204205 844 ntBASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Gm45612-201ENSMUST00000211320 160 ntBASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 AC131187.1-201ENSMUST00000224567 809 ntBASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 AC115735.4-201ENSMUST00000227460 1944 ntBASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC12.54□□□□□ -0.4
Rnf220Q6PDX6 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 AC137842.1-201ENSMUST00000227896 2064 ntBASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Gm17271-201ENSMUST00000165535 355 ntBASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Gpr146-202ENSMUST00000053120 1040 ntBASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Gm38376-201ENSMUST00000195493 2253 ntBASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Gm27177-202ENSMUST00000183514 2703 ntBASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf220Q6PDX6 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Rnf220Q6PDX6 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Rnf220Q6PDX6 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Rnf220Q6PDX6 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Rnf220Q6PDX6 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC12.52□□□□□ -0.4
Rnf220Q6PDX6 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Rnf220Q6PDX6 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Rnf220Q6PDX6 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC12.52□□□□□ -0.4
Rnf220Q6PDX6 Gm42863-201ENSMUST00000197875 2958 ntBASIC12.52□□□□□ -0.4
Rnf220Q6PDX6 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC12.52□□□□□ -0.4
Rnf220Q6PDX6 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Rnf220Q6PDX6 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC12.52□□□□□ -0.4
Rnf220Q6PDX6 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC12.52□□□□□ -0.4
Rnf220Q6PDX6 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms