Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 AC139350.1-201ENSMUST00000227064 1594 ntBASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Gm44241-201ENSMUST00000203230 1662 ntBASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Gm14767-201ENSMUST00000121559 586 ntBASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Rnf17-202ENSMUST00000223627 2077 ntBASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Gm15459-201ENSMUST00000117405 1941 ntBASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Gm8355-201ENSMUST00000177767 1941 ntBASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ptchd3Q0EEE2 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 AC124751.1-201ENSMUST00000222716 1408 ntBASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Gm13453-201ENSMUST00000118708 357 ntBASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Gm17435-202ENSMUST00000212699 1998 ntBASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 AC159621.2-201ENSMUST00000223519 1326 ntBASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Mbnl2-204ENSMUST00000227012 2390 ntBASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Ptchd3Q0EEE2 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC12.79□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms