Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col6a1Q04857 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC14.62□□□□□ -0.07
Col6a1Q04857 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Col6a1Q04857 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC14.62□□□□□ -0.07
Col6a1Q04857 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Gm4909-201ENSMUST00000118749 794 ntBASIC14.62□□□□□ -0.07
Col6a1Q04857 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Gm37444-201ENSMUST00000193605 439 ntBASIC14.62□□□□□ -0.07
Col6a1Q04857 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Col6a1Q04857 Gm29787-201ENSMUST00000222129 849 ntBASIC14.62□□□□□ -0.07
Col6a1Q04857 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Col6a1Q04857 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Col6a1Q04857 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Col6a1Q04857 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col6a1Q04857 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Col6a1Q04857 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC14.61□□□□□ -0.07
Col6a1Q04857 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col6a1Q04857 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col6a1Q04857 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC14.61□□□□□ -0.07
Col6a1Q04857 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col6a1Q04857 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC14.61□□□□□ -0.07
Col6a1Q04857 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col6a1Q04857 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col6a1Q04857 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col6a1Q04857 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col6a1Q04857 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Col6a1Q04857 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC14.61□□□□□ -0.07
Col6a1Q04857 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col6a1Q04857 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC14.61□□□□□ -0.07
Col6a1Q04857 Gm13123-201ENSMUST00000122173 492 ntBASIC14.61□□□□□ -0.07
Col6a1Q04857 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
Col6a1Q04857 Gm7809-201ENSMUST00000153199 742 ntBASIC14.61□□□□□ -0.07
Col6a1Q04857 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC14.61□□□□□ -0.07
Col6a1Q04857 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col6a1Q04857 Gm3809-201ENSMUST00000180973 1006 ntBASIC14.61□□□□□ -0.07
Col6a1Q04857 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC14.61□□□□□ -0.07
Col6a1Q04857 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC14.61□□□□□ -0.07
Col6a1Q04857 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC14.61□□□□□ -0.07
Col6a1Q04857 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col6a1Q04857 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col6a1Q04857 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col6a1Q04857 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col6a1Q04857 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col6a1Q04857 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col6a1Q04857 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col6a1Q04857 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
Col6a1Q04857 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col6a1Q04857 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col6a1Q04857 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col6a1Q04857 Gm2420-202ENSMUST00000202224 2249 ntBASIC14.61□□□□□ -0.07
Col6a1Q04857 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Col6a1Q04857 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Col6a1Q04857 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
Col6a1Q04857 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Col6a1Q04857 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Col6a1Q04857 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 Gm9431-201ENSMUST00000119765 1051 ntBASIC14.6□□□□□ -0.07
Col6a1Q04857 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC14.6□□□□□ -0.07
Col6a1Q04857 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
Col6a1Q04857 Gm8584-201ENSMUST00000171982 758 ntBASIC14.6□□□□□ -0.07
Col6a1Q04857 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC14.6□□□□□ -0.07
Col6a1Q04857 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Col6a1Q04857 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC14.6□□□□□ -0.07
Col6a1Q04857 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC14.6□□□□□ -0.07
Col6a1Q04857 CT030704.2-201ENSMUST00000228887 494 ntBASIC14.6□□□□□ -0.07
Col6a1Q04857 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Col6a1Q04857 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC14.6□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms