Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC15.32■□□□□ 0.04
Col1a1P11087 Gm8018-201ENSMUST00000173536 789 ntBASIC15.32■□□□□ 0.04
Col1a1P11087 Gm20426-201ENSMUST00000173657 440 ntBASIC15.32■□□□□ 0.04
Col1a1P11087 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 Gm44100-201ENSMUST00000204329 436 ntBASIC15.32■□□□□ 0.04
Col1a1P11087 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC15.32■□□□□ 0.04
Col1a1P11087 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Sorbs3-204ENSMUST00000227929 2460 ntBASIC15.31■□□□□ 0.04
Col1a1P11087 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC15.31■□□□□ 0.04
Col1a1P11087 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Col1a1P11087 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Gm12291-201ENSMUST00000121627 311 ntBASIC15.31■□□□□ 0.04
Col1a1P11087 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Gm24749-201ENSMUST00000157838 343 ntBASIC15.31■□□□□ 0.04
Col1a1P11087 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC15.31■□□□□ 0.04
Col1a1P11087 Gm7467-201ENSMUST00000185173 652 ntBASIC15.31■□□□□ 0.04
Col1a1P11087 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC15.31■□□□□ 0.04
Col1a1P11087 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC15.31■□□□□ 0.04
Col1a1P11087 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Col1a1P11087 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Col1a1P11087 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Gm45495-201ENSMUST00000200940 1700 ntBASIC15.31■□□□□ 0.04
Col1a1P11087 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC15.31■□□□□ 0.04
Col1a1P11087 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col1a1P11087 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Col1a1P11087 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col1a1P11087 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col1a1P11087 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col1a1P11087 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col1a1P11087 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col1a1P11087 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col1a1P11087 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col1a1P11087 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col1a1P11087 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Col1a1P11087 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col1a1P11087 Gm2673-201ENSMUST00000120958 1608 ntBASIC15.3■□□□□ 0.04
Col1a1P11087 Gm6992-201ENSMUST00000217973 1607 ntBASIC15.3■□□□□ 0.04
Col1a1P11087 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col1a1P11087 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC15.3■□□□□ 0.04
Col1a1P11087 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC15.3■□□□□ 0.04
Col1a1P11087 Gm12286-201ENSMUST00000119246 1002 ntBASIC15.3■□□□□ 0.04
Col1a1P11087 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col1a1P11087 AC167013.1-201ENSMUST00000228592 202 ntBASIC15.3■□□□□ 0.04
Col1a1P11087 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col1a1P11087 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Col1a1P11087 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC15.3■□□□□ 0.04
Col1a1P11087 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col1a1P11087 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col1a1P11087 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col1a1P11087 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col1a1P11087 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col1a1P11087 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Col1a1P11087 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC15.29■□□□□ 0.04
Col1a1P11087 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC15.29■□□□□ 0.04
Col1a1P11087 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Col1a1P11087 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC15.29■□□□□ 0.04
Col1a1P11087 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC15.29■□□□□ 0.04
Col1a1P11087 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Col1a1P11087 Mir7221-201ENSMUST00000184009 72 ntBASIC15.29■□□□□ 0.04
Col1a1P11087 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Gm10312-201ENSMUST00000078515 489 ntBASIC15.29■□□□□ 0.04
Col1a1P11087 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC15.29■□□□□ 0.04
Col1a1P11087 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 54.8 ms