Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Gm16202-201ENSMUST00000117532 544 ntBASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Gm14127-201ENSMUST00000117906 678 ntBASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Gm8835-201ENSMUST00000173096 1169 ntBASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Mir7221-201ENSMUST00000184009 72 ntBASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Gm44985-201ENSMUST00000206202 1016 ntBASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Cpsf3Q9QXK7 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Gm37922-201ENSMUST00000195596 455 ntBASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Gm29705-201ENSMUST00000212598 474 ntBASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Cpsf3Q9QXK7 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Gm11425-201ENSMUST00000119608 498 ntBASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Gm13123-201ENSMUST00000122173 492 ntBASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Gm11978-201ENSMUST00000122315 466 ntBASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Gm37497-201ENSMUST00000195830 798 ntBASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 AC122459.1-201ENSMUST00000228373 885 ntBASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Gm9396-201ENSMUST00000076703 567 ntBASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Gm45684-201ENSMUST00000210244 1571 ntBASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms