Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Trim56Q80VI1 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.1
Trim56Q80VI1 Gm15459-201ENSMUST00000117405 1941 ntBASIC15.64■□□□□ 0.09
Trim56Q80VI1 Gm8355-201ENSMUST00000177767 1941 ntBASIC15.64■□□□□ 0.09
Trim56Q80VI1 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Gm10146-201ENSMUST00000072739 309 ntBASIC15.64■□□□□ 0.09
Trim56Q80VI1 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim56Q80VI1 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trim56Q80VI1 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim56Q80VI1 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim56Q80VI1 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC15.63■□□□□ 0.09
Trim56Q80VI1 Gm14660-201ENSMUST00000119809 575 ntBASIC15.63■□□□□ 0.09
Trim56Q80VI1 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trim56Q80VI1 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
Trim56Q80VI1 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trim56Q80VI1 Mir1982-201ENSMUST00000157368 74 ntBASIC15.63■□□□□ 0.09
Trim56Q80VI1 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC15.63■□□□□ 0.09
Trim56Q80VI1 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim56Q80VI1 Gm7029-201ENSMUST00000173226 450 ntBASIC15.63■□□□□ 0.09
Trim56Q80VI1 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim56Q80VI1 Gm44985-201ENSMUST00000206202 1016 ntBASIC15.63■□□□□ 0.09
Trim56Q80VI1 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim56Q80VI1 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim56Q80VI1 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trim56Q80VI1 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim56Q80VI1 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim56Q80VI1 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trim56Q80VI1 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Gm27682-201ENSMUST00000183930 110 ntBASIC15.62■□□□□ 0.09
Trim56Q80VI1 Gm2824-203ENSMUST00000226189 1228 ntBASIC15.62■□□□□ 0.09
Trim56Q80VI1 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim56Q80VI1 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC15.61■□□□□ 0.09
Trim56Q80VI1 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms