Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Trim28Q62318 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Trim28Q62318 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Trim28Q62318 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Trim28Q62318 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC17.11■□□□□ 0.33
Trim28Q62318 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trim28Q62318 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
Trim28Q62318 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC17.11■□□□□ 0.33
Trim28Q62318 Gm2991-201ENSMUST00000173338 480 ntBASIC17.11■□□□□ 0.33
Trim28Q62318 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Trim28Q62318 Gm18916-201ENSMUST00000198264 1246 ntBASIC17.11■□□□□ 0.33
Trim28Q62318 Gm21769-201ENSMUST00000211922 111 ntBASIC17.11■□□□□ 0.33
Trim28Q62318 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Trim28Q62318 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trim28Q62318 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim28Q62318 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim28Q62318 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim28Q62318 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim28Q62318 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim28Q62318 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim28Q62318 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC17.11■□□□□ 0.33
Trim28Q62318 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Trim28Q62318 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Trim28Q62318 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC17.1■□□□□ 0.33
Trim28Q62318 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Trim28Q62318 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
Trim28Q62318 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim28Q62318 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim28Q62318 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim28Q62318 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim28Q62318 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim28Q62318 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim28Q62318 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim28Q62318 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim28Q62318 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim28Q62318 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Trim28Q62318 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim28Q62318 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim28Q62318 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim28Q62318 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim28Q62318 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim28Q62318 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC17.09■□□□□ 0.33
Trim28Q62318 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC17.09■□□□□ 0.33
Trim28Q62318 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC17.09■□□□□ 0.33
Trim28Q62318 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC17.09■□□□□ 0.33
Trim28Q62318 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim28Q62318 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim28Q62318 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim28Q62318 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim28Q62318 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Trim28Q62318 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim28Q62318 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim28Q62318 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
Trim28Q62318 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim28Q62318 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim28Q62318 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim28Q62318 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim28Q62318 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim28Q62318 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim28Q62318 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
Trim28Q62318 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim28Q62318 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim28Q62318 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim28Q62318 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Trim28Q62318 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim28Q62318 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Trim28Q62318 Gm11964-201ENSMUST00000120982 444 ntBASIC17.08■□□□□ 0.32
Trim28Q62318 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim28Q62318 Gm37489-201ENSMUST00000191883 159 ntBASIC17.08■□□□□ 0.32
Trim28Q62318 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC17.08■□□□□ 0.32
Trim28Q62318 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim28Q62318 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim28Q62318 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Trim28Q62318 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim28Q62318 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim28Q62318 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim28Q62318 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim28Q62318 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Trim28Q62318 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim28Q62318 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 40.9 ms