Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Gm37472-201ENSMUST00000192342 4052 ntBASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Gm27631-201ENSMUST00000184163 466 ntBASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Gm5264-201ENSMUST00000190584 848 ntBASIC12.44□□□□□ -0.42
Trim40Q3UWA4 AC131710.1-201ENSMUST00000228336 990 ntBASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trim40Q3UWA4 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Ighv1-25-201ENSMUST00000195638 345 ntBASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Gm10728-201ENSMUST00000194292 1829 ntBASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Trim40Q3UWA4 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Trim40Q3UWA4 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim40Q3UWA4 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim40Q3UWA4 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Trim40Q3UWA4 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim40Q3UWA4 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC12.42□□□□□ -0.42
Trim40Q3UWA4 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim40Q3UWA4 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Trim40Q3UWA4 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim40Q3UWA4 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim40Q3UWA4 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Trim40Q3UWA4 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC12.42□□□□□ -0.42
Trim40Q3UWA4 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim40Q3UWA4 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms