Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Gm6152-201ENSMUST00000151704 340 ntBASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Gm18473-201ENSMUST00000220543 868 ntBASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Upf3bQ3ULL6 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.14
Upf3bQ3ULL6 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Upf3bQ3ULL6 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Upf3bQ3ULL6 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Upf3bQ3ULL6 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Upf3bQ3ULL6 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Upf3bQ3ULL6 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Gm37844-201ENSMUST00000192473 4097 ntBASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Mir874-201ENSMUST00000104769 76 ntBASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Gm15806-201ENSMUST00000120696 955 ntBASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Gm9002-201ENSMUST00000178437 499 ntBASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Gm45841-201ENSMUST00000207700 164 ntBASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 AC173210.1-201ENSMUST00000222341 1131 ntBASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 AC140375.2-201ENSMUST00000225283 584 ntBASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 AC096628.2-201ENSMUST00000225443 1413 ntBASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Gm38094-201ENSMUST00000195864 2978 ntBASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Gm45003-201ENSMUST00000205875 2158 ntBASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Upf3bQ3ULL6 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Gm43134-201ENSMUST00000199434 1886 ntBASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms