Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Limch1Q3UH68 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Gm12390-201ENSMUST00000117897 397 ntBASIC15.64■□□□□ 0.09
Limch1Q3UH68 Gm12485-201ENSMUST00000119641 291 ntBASIC15.64■□□□□ 0.09
Limch1Q3UH68 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Gm6007-201ENSMUST00000208170 823 ntBASIC15.64■□□□□ 0.09
Limch1Q3UH68 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Limch1Q3UH68 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Limch1Q3UH68 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC15.63■□□□□ 0.09
Limch1Q3UH68 Gm37844-201ENSMUST00000192473 4097 ntBASIC15.63■□□□□ 0.09
Limch1Q3UH68 Gm5912-201ENSMUST00000122282 1438 ntBASIC15.63■□□□□ 0.09
Limch1Q3UH68 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Gm37644-201ENSMUST00000192190 2270 ntBASIC15.63■□□□□ 0.09
Limch1Q3UH68 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Limch1Q3UH68 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Gm27839-201ENSMUST00000184242 106 ntBASIC15.63■□□□□ 0.09
Limch1Q3UH68 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC15.63■□□□□ 0.09
Limch1Q3UH68 Gm37444-201ENSMUST00000193605 439 ntBASIC15.63■□□□□ 0.09
Limch1Q3UH68 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC15.63■□□□□ 0.09
Limch1Q3UH68 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC15.63■□□□□ 0.09
Limch1Q3UH68 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Gm7067-201ENSMUST00000207698 1249 ntBASIC15.63■□□□□ 0.09
Limch1Q3UH68 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Limch1Q3UH68 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Limch1Q3UH68 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Limch1Q3UH68 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Gm9816-201ENSMUST00000122292 1414 ntBASIC15.62■□□□□ 0.09
Limch1Q3UH68 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Gm17870-201ENSMUST00000219489 1174 ntBASIC15.62■□□□□ 0.09
Limch1Q3UH68 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
Limch1Q3UH68 AC131068.2-201ENSMUST00000226175 1453 ntBASIC15.62■□□□□ 0.09
Limch1Q3UH68 Gm43423-201ENSMUST00000198390 2094 ntBASIC15.62■□□□□ 0.09
Limch1Q3UH68 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC15.62■□□□□ 0.09
Limch1Q3UH68 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Limch1Q3UH68 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 46.6 ms