Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Cux1P53564 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Cux1P53564 Gm19208-201ENSMUST00000213861 912 ntBASIC20.07■□□□□ 0.8
Cux1P53564 Gm29787-201ENSMUST00000222129 849 ntBASIC20.07■□□□□ 0.8
Cux1P53564 AC154222.2-201ENSMUST00000225848 607 ntBASIC20.07■□□□□ 0.8
Cux1P53564 Gm14267-206ENSMUST00000226870 1209 ntBASIC20.07■□□□□ 0.8
Cux1P53564 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cux1P53564 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cux1P53564 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cux1P53564 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cux1P53564 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cux1P53564 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC20.07■□□□□ 0.8
Cux1P53564 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cux1P53564 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cux1P53564 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cux1P53564 Gm14263-201ENSMUST00000117955 746 ntBASIC20.07■□□□□ 0.8
Cux1P53564 Gm13996-201ENSMUST00000118456 430 ntBASIC20.07■□□□□ 0.8
Cux1P53564 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC20.07■□□□□ 0.8
Cux1P53564 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cux1P53564 Gm45495-201ENSMUST00000200940 1700 ntBASIC20.07■□□□□ 0.8
Cux1P53564 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Cux1P53564 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Cux1P53564 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cux1P53564 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Cux1P53564 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
Cux1P53564 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cux1P53564 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Cux1P53564 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cux1P53564 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cux1P53564 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cux1P53564 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Cux1P53564 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cux1P53564 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cux1P53564 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Cux1P53564 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Cux1P53564 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cux1P53564 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cux1P53564 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Cux1P53564 Gm13315-201ENSMUST00000120376 991 ntBASIC20.06■□□□□ 0.8
Cux1P53564 Gm34767-201ENSMUST00000191813 1062 ntBASIC20.06■□□□□ 0.8
Cux1P53564 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cux1P53564 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cux1P53564 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Cux1P53564 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cux1P53564 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Cux1P53564 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cux1P53564 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC20.05■□□□□ 0.8
Cux1P53564 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cux1P53564 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cux1P53564 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC20.05■□□□□ 0.8
Cux1P53564 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cux1P53564 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Cux1P53564 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Cux1P53564 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Cux1P53564 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC20.05■□□□□ 0.8
Cux1P53564 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Cux1P53564 Gm24514-201ENSMUST00000174961 285 ntBASIC20.05■□□□□ 0.8
Cux1P53564 Rprl1-202ENSMUST00000198476 238 ntBASIC20.05■□□□□ 0.8
Cux1P53564 AC131330.1-201ENSMUST00000227814 1015 ntBASIC20.05■□□□□ 0.8
Cux1P53564 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cux1P53564 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Cux1P53564 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cux1P53564 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Cux1P53564 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cux1P53564 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cux1P53564 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Cux1P53564 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cux1P53564 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cux1P53564 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cux1P53564 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cux1P53564 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Cux1P53564 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC20.04■□□□□ 0.8
Cux1P53564 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Cux1P53564 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cux1P53564 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Cux1P53564 Gm15459-201ENSMUST00000117405 1941 ntBASIC20.04■□□□□ 0.8
Cux1P53564 Gm11331-201ENSMUST00000119764 288 ntBASIC20.04■□□□□ 0.8
Cux1P53564 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC20.04■□□□□ 0.8
Cux1P53564 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC20.04■□□□□ 0.8
Cux1P53564 Gm8355-201ENSMUST00000177767 1941 ntBASIC20.04■□□□□ 0.8
Cux1P53564 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Cux1P53564 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cux1P53564 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC20.04■□□□□ 0.8
Cux1P53564 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC20.04■□□□□ 0.8
Cux1P53564 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Cux1P53564 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC20.04■□□□□ 0.8
Cux1P53564 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cux1P53564 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cux1P53564 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
Cux1P53564 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cux1P53564 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Cux1P53564 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Cux1P53564 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC20.04■□□□□ 0.8
Cux1P53564 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Cux1P53564 Zkscan3-208ENSMUST00000224820 5398 ntBASIC20.04■□□□□ 0.8
Cux1P53564 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cux1P53564 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cux1P53564 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Cux1P53564 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cux1P53564 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms