Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Shmt1P50431 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Shmt1P50431 Gm11618-201ENSMUST00000117946 267 ntBASIC14.03□□□□□ -0.16
Shmt1P50431 Gm6161-201ENSMUST00000121942 1102 ntBASIC14.03□□□□□ -0.16
Shmt1P50431 Gm13123-201ENSMUST00000122173 492 ntBASIC14.03□□□□□ -0.16
Shmt1P50431 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Shmt1P50431 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Shmt1P50431 Gm6254-201ENSMUST00000168178 1072 ntBASIC14.03□□□□□ -0.16
Shmt1P50431 Gm6153-201ENSMUST00000172004 1058 ntBASIC14.03□□□□□ -0.16
Shmt1P50431 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Shmt1P50431 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC14.03□□□□□ -0.16
Shmt1P50431 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Shmt1P50431 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC14.03□□□□□ -0.16
Shmt1P50431 Gm5641-202ENSMUST00000198699 1080 ntBASIC14.03□□□□□ -0.16
Shmt1P50431 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC14.03□□□□□ -0.16
Shmt1P50431 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC14.03□□□□□ -0.16
Shmt1P50431 Gm6007-201ENSMUST00000208170 823 ntBASIC14.03□□□□□ -0.16
Shmt1P50431 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Shmt1P50431 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Shmt1P50431 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Shmt1P50431 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Shmt1P50431 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Shmt1P50431 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Shmt1P50431 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC14.03□□□□□ -0.16
Shmt1P50431 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Shmt1P50431 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC14.03□□□□□ -0.16
Shmt1P50431 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Shmt1P50431 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Shmt1P50431 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Shmt1P50431 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Shmt1P50431 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Shmt1P50431 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Shmt1P50431 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Shmt1P50431 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Shmt1P50431 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Shmt1P50431 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Shmt1P50431 Gm43423-201ENSMUST00000198390 2094 ntBASIC14.02□□□□□ -0.16
Shmt1P50431 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Shmt1P50431 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Shmt1P50431 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Shmt1P50431 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Shmt1P50431 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC14.02□□□□□ -0.16
Shmt1P50431 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Shmt1P50431 Gm45684-201ENSMUST00000210244 1571 ntBASIC14.02□□□□□ -0.16
Shmt1P50431 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Shmt1P50431 Gm16202-201ENSMUST00000117532 544 ntBASIC14.02□□□□□ -0.17
Shmt1P50431 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Shmt1P50431 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Shmt1P50431 Gm45784-201ENSMUST00000188360 142 ntBASIC14.02□□□□□ -0.17
Shmt1P50431 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC14.02□□□□□ -0.17
Shmt1P50431 Gm9299-201ENSMUST00000206392 1140 ntBASIC14.02□□□□□ -0.17
Shmt1P50431 AC140451.2-201ENSMUST00000228030 664 ntBASIC14.02□□□□□ -0.17
Shmt1P50431 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Shmt1P50431 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Shmt1P50431 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Shmt1P50431 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Shmt1P50431 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Shmt1P50431 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Shmt1P50431 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Shmt1P50431 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Shmt1P50431 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Ksr1-207ENSMUST00000226282 5260 ntBASIC14.01□□□□□ -0.17
Shmt1P50431 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC14.01□□□□□ -0.17
Shmt1P50431 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC14.01□□□□□ -0.17
Shmt1P50431 Gm8805-201ENSMUST00000117848 313 ntBASIC14.01□□□□□ -0.17
Shmt1P50431 Gm14660-201ENSMUST00000119809 575 ntBASIC14.01□□□□□ -0.17
Shmt1P50431 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC14.01□□□□□ -0.17
Shmt1P50431 Gm27731-201ENSMUST00000185192 107 ntBASIC14.01□□□□□ -0.17
Shmt1P50431 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC14.01□□□□□ -0.17
Shmt1P50431 Gm37922-201ENSMUST00000195596 455 ntBASIC14.01□□□□□ -0.17
Shmt1P50431 Gm37497-201ENSMUST00000195830 798 ntBASIC14.01□□□□□ -0.17
Shmt1P50431 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC14.01□□□□□ -0.17
Shmt1P50431 AC122305.4-201ENSMUST00000216159 1206 ntBASIC14.01□□□□□ -0.17
Shmt1P50431 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Shmt1P50431 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Shmt1P50431 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
Shmt1P50431 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Shmt1P50431 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC14.01□□□□□ -0.17
Shmt1P50431 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Shmt1P50431 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC14□□□□□ -0.17
Shmt1P50431 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 81.7 ms