Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Tnfsf4P43488 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Tnfsf4P43488 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Tnfsf4P43488 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Tnfsf4P43488 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Tnfsf4P43488 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Tnfsf4P43488 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.35
Tnfsf4P43488 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Gm24447-201ENSMUST00000083977 338 ntBASIC12.83□□□□□ -0.36
Tnfsf4P43488 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Gm45643-201ENSMUST00000211364 1484 ntBASIC12.83□□□□□ -0.36
Tnfsf4P43488 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Gm44851-201ENSMUST00000205735 2309 ntBASIC12.83□□□□□ -0.36
Tnfsf4P43488 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Tnfsf4P43488 Gm5466-201ENSMUST00000119395 1890 ntBASIC12.82□□□□□ -0.36
Tnfsf4P43488 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Tnfsf4P43488 AC151895.1-201ENSMUST00000219025 1742 ntBASIC12.82□□□□□ -0.36
Tnfsf4P43488 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC12.82□□□□□ -0.36
Tnfsf4P43488 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Tnfsf4P43488 AC116503.1-201ENSMUST00000215445 2192 ntBASIC12.82□□□□□ -0.36
Tnfsf4P43488 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Tnfsf4P43488 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Tnfsf4P43488 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Gm13616-201ENSMUST00000120600 222 ntBASIC12.81□□□□□ -0.36
Tnfsf4P43488 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Gm37935-201ENSMUST00000192012 982 ntBASIC12.81□□□□□ -0.36
Tnfsf4P43488 Gm37171-201ENSMUST00000192636 1185 ntBASIC12.81□□□□□ -0.36
Tnfsf4P43488 Gm17870-201ENSMUST00000219489 1174 ntBASIC12.81□□□□□ -0.36
Tnfsf4P43488 AC159114.1-201ENSMUST00000220349 266 ntBASIC12.81□□□□□ -0.36
Tnfsf4P43488 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Tnfsf4P43488 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms