Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 AC139350.1-201ENSMUST00000227064 1594 ntBASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Gm9755-201ENSMUST00000032981 1356 ntBASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Gm5303-201ENSMUST00000117943 1252 ntBASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Gm13612-201ENSMUST00000119276 390 ntBASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Gm15824-201ENSMUST00000119516 955 ntBASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Gm17150-201ENSMUST00000165577 381 ntBASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Gm14127-201ENSMUST00000117906 678 ntBASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Mup-ps23-201ENSMUST00000118063 630 ntBASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC13.63□□□□□ -0.23
Vps28Q9D1C8 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC13.63□□□□□ -0.23
Vps28Q9D1C8 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Vps28Q9D1C8 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 AC238940.1-201ENSMUST00000225106 1858 ntBASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Gm11814-201ENSMUST00000119515 929 ntBASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms