Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC17.14■□□□□ 0.33
Trim28Q62318 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 Gm4986-201ENSMUST00000119731 549 ntBASIC17.14■□□□□ 0.33
Trim28Q62318 Gm12502-201ENSMUST00000120197 444 ntBASIC17.14■□□□□ 0.33
Trim28Q62318 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 Gm5637-201ENSMUST00000153890 1119 ntBASIC17.14■□□□□ 0.33
Trim28Q62318 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC17.14■□□□□ 0.33
Trim28Q62318 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Trim28Q62318 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC17.14■□□□□ 0.33
Trim28Q62318 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC17.14■□□□□ 0.33
Trim28Q62318 Morn2-202ENSMUST00000227729 656 ntBASIC17.14■□□□□ 0.33
Trim28Q62318 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 AC122314.1-201ENSMUST00000223056 2239 ntBASIC17.14■□□□□ 0.33
Trim28Q62318 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC17.14■□□□□ 0.33
Trim28Q62318 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC17.14■□□□□ 0.33
Trim28Q62318 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Trim28Q62318 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim28Q62318 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC17.13■□□□□ 0.33
Trim28Q62318 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim28Q62318 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC17.13■□□□□ 0.33
Trim28Q62318 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC17.13■□□□□ 0.33
Trim28Q62318 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC17.13■□□□□ 0.33
Trim28Q62318 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim28Q62318 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim28Q62318 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim28Q62318 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Trim28Q62318 Gm5421-201ENSMUST00000181698 2354 ntBASIC17.13■□□□□ 0.33
Trim28Q62318 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC17.13■□□□□ 0.33
Trim28Q62318 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC17.13■□□□□ 0.33
Trim28Q62318 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Trim28Q62318 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC17.13■□□□□ 0.33
Trim28Q62318 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim28Q62318 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC17.13■□□□□ 0.33
Trim28Q62318 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC17.13■□□□□ 0.33
Trim28Q62318 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim28Q62318 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim28Q62318 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim28Q62318 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim28Q62318 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim28Q62318 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC17.13■□□□□ 0.33
Trim28Q62318 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim28Q62318 Gm8798-201ENSMUST00000211877 1661 ntBASIC17.13■□□□□ 0.33
Trim28Q62318 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim28Q62318 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Trim28Q62318 Gm43399-201ENSMUST00000202546 2374 ntBASIC17.13■□□□□ 0.33
Trim28Q62318 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim28Q62318 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim28Q62318 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC17.12■□□□□ 0.33
Trim28Q62318 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim28Q62318 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim28Q62318 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim28Q62318 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim28Q62318 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim28Q62318 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Trim28Q62318 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim28Q62318 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim28Q62318 Gm24255-201ENSMUST00000104481 128 ntBASIC17.12■□□□□ 0.33
Trim28Q62318 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim28Q62318 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
Trim28Q62318 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC17.12■□□□□ 0.33
Trim28Q62318 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim28Q62318 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim28Q62318 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim28Q62318 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC17.12■□□□□ 0.33
Trim28Q62318 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC17.12■□□□□ 0.33
Trim28Q62318 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC17.12■□□□□ 0.33
Trim28Q62318 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC17.12■□□□□ 0.33
Trim28Q62318 AC132384.14-201ENSMUST00000219346 1147 ntBASIC17.12■□□□□ 0.33
Trim28Q62318 Gm24526-201ENSMUST00000082921 158 ntBASIC17.12■□□□□ 0.33
Trim28Q62318 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim28Q62318 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC17.12■□□□□ 0.33
Trim28Q62318 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim28Q62318 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim28Q62318 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC17.12■□□□□ 0.33
Trim28Q62318 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim28Q62318 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim28Q62318 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim28Q62318 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim28Q62318 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Trim28Q62318 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim28Q62318 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim28Q62318 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim28Q62318 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim28Q62318 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Trim28Q62318 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Trim28Q62318 Gm44891-201ENSMUST00000208817 2223 ntBASIC17.11■□□□□ 0.33
Trim28Q62318 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Trim28Q62318 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms