Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 Gm45059-201ENSMUST00000205558 1077 ntBASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 Gm8463-201ENSMUST00000208573 613 ntBASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 CT030657.3-201ENSMUST00000222707 1200 ntBASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 Itm2b-204ENSMUST00000228637 783 ntBASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Upf3bQ3ULL6 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Gm10040-201ENSMUST00000080726 1662 ntBASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Gm7653-201ENSMUST00000214567 508 ntBASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Gm12500-202ENSMUST00000186471 2428 ntBASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Gm5912-201ENSMUST00000122282 1438 ntBASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Upf3bQ3ULL6 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Gm5687-201ENSMUST00000118252 640 ntBASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Gm12960-201ENSMUST00000120017 1066 ntBASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 AL645783.1-201ENSMUST00000221416 1832 ntBASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC14.22□□□□□ -0.13
Upf3bQ3ULL6 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC14.21□□□□□ -0.13
Upf3bQ3ULL6 Gm11424-201ENSMUST00000121929 829 ntBASIC14.21□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms