Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 AC125108.1-201ENSMUST00000218986 2330 ntBASIC15.89■□□□□ 0.13
Rfx1P48377 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx1P48377 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx1P48377 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC15.88■□□□□ 0.13
Rfx1P48377 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx1P48377 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx1P48377 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx1P48377 Kcnk16-202ENSMUST00000225596 2127 ntBASIC15.88■□□□□ 0.13
Rfx1P48377 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx1P48377 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx1P48377 Gm13859-201ENSMUST00000119936 1423 ntBASIC15.88■□□□□ 0.13
Rfx1P48377 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx1P48377 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx1P48377 Gm15393-201ENSMUST00000120499 219 ntBASIC15.88■□□□□ 0.13
Rfx1P48377 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx1P48377 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC15.88■□□□□ 0.13
Rfx1P48377 Gm27533-201ENSMUST00000183800 152 ntBASIC15.88■□□□□ 0.13
Rfx1P48377 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC15.88■□□□□ 0.13
Rfx1P48377 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC15.88■□□□□ 0.13
Rfx1P48377 AC154621.1-201ENSMUST00000226155 1119 ntBASIC15.88■□□□□ 0.13
Rfx1P48377 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Rfx1P48377 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx1P48377 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Rfx1P48377 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx1P48377 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx1P48377 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC15.88■□□□□ 0.13
Rfx1P48377 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC15.88■□□□□ 0.13
Rfx1P48377 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx1P48377 Gm5466-201ENSMUST00000119395 1890 ntBASIC15.88■□□□□ 0.13
Rfx1P48377 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx1P48377 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Rfx1P48377 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx1P48377 Gm38385-201ENSMUST00000194454 2351 ntBASIC15.87■□□□□ 0.13
Rfx1P48377 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx1P48377 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx1P48377 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx1P48377 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx1P48377 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx1P48377 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx1P48377 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Rfx1P48377 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC15.87■□□□□ 0.13
Rfx1P48377 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx1P48377 Gm37444-201ENSMUST00000193605 439 ntBASIC15.87■□□□□ 0.13
Rfx1P48377 Gm10766-202ENSMUST00000194123 606 ntBASIC15.87■□□□□ 0.13
Rfx1P48377 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx1P48377 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx1P48377 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx1P48377 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx1P48377 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Rfx1P48377 AC241621.2-201ENSMUST00000223991 2151 ntBASIC15.87■□□□□ 0.13
Rfx1P48377 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx1P48377 Gm17435-202ENSMUST00000212699 1998 ntBASIC15.87■□□□□ 0.13
Rfx1P48377 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx1P48377 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx1P48377 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC15.87■□□□□ 0.13
Rfx1P48377 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
Rfx1P48377 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx1P48377 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx1P48377 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Rfx1P48377 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC15.86■□□□□ 0.13
Rfx1P48377 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Rfx1P48377 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC15.86■□□□□ 0.13
Rfx1P48377 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Rfx1P48377 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC15.86■□□□□ 0.13
Rfx1P48377 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC15.86■□□□□ 0.13
Rfx1P48377 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Rfx1P48377 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC15.86■□□□□ 0.13
Rfx1P48377 Gm15653-201ENSMUST00000119247 907 ntBASIC15.86■□□□□ 0.13
Rfx1P48377 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC15.86■□□□□ 0.13
Rfx1P48377 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 Gm27622-201ENSMUST00000183779 60 ntBASIC15.86■□□□□ 0.13
Rfx1P48377 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC15.86■□□□□ 0.13
Rfx1P48377 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC15.86■□□□□ 0.13
Rfx1P48377 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Rfx1P48377 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Rfx1P48377 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Rfx1P48377 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms