Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Daam2-202ENSMUST00000224595 1926 ntBASIC15.67■□□□□ 0.1
Col3a1P08121 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Col3a1P08121 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Gm44207-201ENSMUST00000204568 1424 ntBASIC15.67■□□□□ 0.1
Col3a1P08121 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC15.66■□□□□ 0.1
Col3a1P08121 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Gm13875-201ENSMUST00000120162 282 ntBASIC15.66■□□□□ 0.1
Col3a1P08121 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC15.66■□□□□ 0.1
Col3a1P08121 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Col3a1P08121 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Gm8176-201ENSMUST00000191297 1099 ntBASIC15.66■□□□□ 0.1
Col3a1P08121 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC15.66■□□□□ 0.1
Col3a1P08121 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Col3a1P08121 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Col3a1P08121 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Col3a1P08121 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Col3a1P08121 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Col3a1P08121 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Col3a1P08121 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Gm44094-201ENSMUST00000204703 2030 ntBASIC15.66■□□□□ 0.1
Col3a1P08121 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Gm44891-201ENSMUST00000208817 2223 ntBASIC15.66■□□□□ 0.1
Col3a1P08121 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Col3a1P08121 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col3a1P08121 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Col3a1P08121 Gm11531-201ENSMUST00000117614 555 ntBASIC15.65■□□□□ 0.1
Col3a1P08121 Gm16296-201ENSMUST00000159905 325 ntBASIC15.65■□□□□ 0.1
Col3a1P08121 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
Col3a1P08121 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC15.65■□□□□ 0.1
Col3a1P08121 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Col3a1P08121 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC15.65■□□□□ 0.1
Col3a1P08121 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC15.65■□□□□ 0.1
Col3a1P08121 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Col3a1P08121 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Col3a1P08121 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
Col3a1P08121 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Col3a1P08121 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col3a1P08121 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
Col3a1P08121 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col3a1P08121 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 62.8 ms