Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Gm4984-201ENSMUST00000115987 360 ntBASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Gm27486-201ENSMUST00000184923 80 ntBASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
Vps28Q9D1C8 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Gm6152-201ENSMUST00000151704 340 ntBASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Gm18473-201ENSMUST00000220543 868 ntBASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Itm2b-204ENSMUST00000228637 783 ntBASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Gm14752-201ENSMUST00000120719 2075 ntBASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Acot6-202ENSMUST00000222921 3622 ntBASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Grk6-205ENSMUST00000224653 2976 ntBASIC13.65□□□□□ -0.22
Vps28Q9D1C8 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.23
Vps28Q9D1C8 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
Vps28Q9D1C8 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC13.65□□□□□ -0.23
Vps28Q9D1C8 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Vps28Q9D1C8 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms