Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Gm6981-201ENSMUST00000182467 1008 ntBASIC18.71■□□□□ 0.59
Usp47Q8BY87 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Usp47Q8BY87 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC18.71■□□□□ 0.59
Usp47Q8BY87 Gm17823-201ENSMUST00000217830 1006 ntBASIC18.71■□□□□ 0.59
Usp47Q8BY87 Gm19163-201ENSMUST00000223313 780 ntBASIC18.71■□□□□ 0.59
Usp47Q8BY87 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usp47Q8BY87 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usp47Q8BY87 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC18.71■□□□□ 0.59
Usp47Q8BY87 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usp47Q8BY87 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usp47Q8BY87 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usp47Q8BY87 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usp47Q8BY87 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usp47Q8BY87 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usp47Q8BY87 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usp47Q8BY87 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Usp47Q8BY87 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp47Q8BY87 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp47Q8BY87 Gm26185-201ENSMUST00000157692 266 ntBASIC18.7■□□□□ 0.58
Usp47Q8BY87 Gm22121-201ENSMUST00000175148 54 ntBASIC18.7■□□□□ 0.58
Usp47Q8BY87 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC18.7■□□□□ 0.58
Usp47Q8BY87 Gm19931-201ENSMUST00000198920 368 ntBASIC18.7■□□□□ 0.58
Usp47Q8BY87 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp47Q8BY87 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp47Q8BY87 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp47Q8BY87 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Usp47Q8BY87 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp47Q8BY87 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC18.7■□□□□ 0.58
Usp47Q8BY87 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp47Q8BY87 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp47Q8BY87 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp47Q8BY87 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp47Q8BY87 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp47Q8BY87 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp47Q8BY87 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp47Q8BY87 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC18.7■□□□□ 0.58
Usp47Q8BY87 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC18.7■□□□□ 0.58
Usp47Q8BY87 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 CT009713.10-201ENSMUST00000225013 1986 ntBASIC18.69■□□□□ 0.58
Usp47Q8BY87 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Gm9431-201ENSMUST00000119765 1051 ntBASIC18.69■□□□□ 0.58
Usp47Q8BY87 Gm11591-201ENSMUST00000120063 702 ntBASIC18.69■□□□□ 0.58
Usp47Q8BY87 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC18.69■□□□□ 0.58
Usp47Q8BY87 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Gm38319-201ENSMUST00000194537 1266 ntBASIC18.69■□□□□ 0.58
Usp47Q8BY87 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp47Q8BY87 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Gm14704-201ENSMUST00000120300 874 ntBASIC18.68■□□□□ 0.58
Usp47Q8BY87 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC18.68■□□□□ 0.58
Usp47Q8BY87 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Mir6420-201ENSMUST00000185032 102 ntBASIC18.68■□□□□ 0.58
Usp47Q8BY87 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Gm43133-201ENSMUST00000197472 463 ntBASIC18.68■□□□□ 0.58
Usp47Q8BY87 Gm19309-201ENSMUST00000218295 205 ntBASIC18.68■□□□□ 0.58
Usp47Q8BY87 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC18.68■□□□□ 0.58
Usp47Q8BY87 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp47Q8BY87 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 55.2 ms