Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx1P13297 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Msx1P13297 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Msx1P13297 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx1P13297 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
Msx1P13297 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC12.74□□□□□ -0.37
Msx1P13297 Gm37648-201ENSMUST00000192072 2563 ntBASIC12.74□□□□□ -0.37
Msx1P13297 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Msx1P13297 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 0610040B10Rik-203ENSMUST00000198455 1643 ntBASIC12.73□□□□□ -0.37
Msx1P13297 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC12.73□□□□□ -0.37
Msx1P13297 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Msx1P13297 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Msx1P13297 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC12.73□□□□□ -0.37
Msx1P13297 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC12.73□□□□□ -0.37
Msx1P13297 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC12.73□□□□□ -0.37
Msx1P13297 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Gm13183-201ENSMUST00000118615 789 ntBASIC12.73□□□□□ -0.37
Msx1P13297 Gm11524-201ENSMUST00000119349 807 ntBASIC12.73□□□□□ -0.37
Msx1P13297 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Speer4f2-201ENSMUST00000166086 1278 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Msx1P13297 Gm20822-202ENSMUST00000188422 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Gm20828-202ENSMUST00000190516 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 1700066B17Rik-203ENSMUST00000191299 536 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Gm43049-202ENSMUST00000198942 559 ntTSL 2 BASIC12.73□□□□□ -0.37
Msx1P13297 Gm6649-201ENSMUST00000199743 1165 ntBASIC12.73□□□□□ -0.37
Msx1P13297 Gm19540-201ENSMUST00000221843 810 ntBASIC12.73□□□□□ -0.37
Msx1P13297 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC12.73□□□□□ -0.37
Msx1P13297 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Msx1P13297 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Msx1P13297 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Msx1P13297 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC12.73□□□□□ -0.37
Msx1P13297 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Msx1P13297 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC12.73□□□□□ -0.37
Msx1P13297 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx1P13297 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Msx1P13297 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Gm3676-201ENSMUST00000111869 899 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
Msx1P13297 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Gm12329-201ENSMUST00000120829 1007 ntBASIC12.72□□□□□ -0.37
Msx1P13297 Gm12416-201ENSMUST00000120911 1008 ntBASIC12.72□□□□□ -0.37
Msx1P13297 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Gm24420-201ENSMUST00000176676 59 ntBASIC12.72□□□□□ -0.37
Msx1P13297 Gm5370-201ENSMUST00000187187 574 ntBASIC12.72□□□□□ -0.37
Msx1P13297 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC12.72□□□□□ -0.37
Msx1P13297 Gm42442-201ENSMUST00000197951 1133 ntBASIC12.72□□□□□ -0.37
Msx1P13297 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC12.72□□□□□ -0.37
Msx1P13297 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC12.72□□□□□ -0.37
Msx1P13297 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx1P13297 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms