Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC11.85□□□□□ -0.51
Col5a1O88207 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
Col5a1O88207 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Gm13492-201ENSMUST00000119772 665 ntBASIC11.85□□□□□ -0.51
Col5a1O88207 Gm12291-201ENSMUST00000121627 311 ntBASIC11.85□□□□□ -0.51
Col5a1O88207 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC11.85□□□□□ -0.51
Col5a1O88207 Mir7221-201ENSMUST00000184009 72 ntBASIC11.85□□□□□ -0.51
Col5a1O88207 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC11.85□□□□□ -0.51
Col5a1O88207 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC11.85□□□□□ -0.51
Col5a1O88207 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC11.85□□□□□ -0.51
Col5a1O88207 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Gm15459-201ENSMUST00000117405 1941 ntBASIC11.85□□□□□ -0.51
Col5a1O88207 Gm8355-201ENSMUST00000177767 1941 ntBASIC11.85□□□□□ -0.51
Col5a1O88207 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC11.84□□□□□ -0.51
Col5a1O88207 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Gm9924-202ENSMUST00000192760 2311 ntBASIC11.84□□□□□ -0.51
Col5a1O88207 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
Col5a1O88207 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC11.84□□□□□ -0.51
Col5a1O88207 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
Col5a1O88207 Gm45242-201ENSMUST00000210666 2129 ntBASIC11.84□□□□□ -0.51
Col5a1O88207 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Gm44291-201ENSMUST00000203102 2865 ntBASIC11.84□□□□□ -0.51
Col5a1O88207 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
Col5a1O88207 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC11.84□□□□□ -0.51
Col5a1O88207 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Col5a1O88207 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
Col5a1O88207 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Gm19221-201ENSMUST00000221827 1477 ntBASIC11.84□□□□□ -0.51
Col5a1O88207 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col5a1O88207 Gm23363-201ENSMUST00000175024 79 ntBASIC11.83□□□□□ -0.51
Col5a1O88207 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
Col5a1O88207 Gm27046-201ENSMUST00000182160 463 ntBASIC11.83□□□□□ -0.51
Col5a1O88207 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC11.83□□□□□ -0.51
Col5a1O88207 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC11.83□□□□□ -0.51
Col5a1O88207 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Col5a1O88207 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
Col5a1O88207 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.51
Col5a1O88207 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Col5a1O88207 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC11.83□□□□□ -0.51
Col5a1O88207 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC11.83□□□□□ -0.52
Col5a1O88207 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC11.83□□□□□ -0.52
Col5a1O88207 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Col5a1O88207 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Col5a1O88207 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC11.83□□□□□ -0.52
Col5a1O88207 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Gm4782-201ENSMUST00000168705 2046 ntBASIC11.83□□□□□ -0.52
Col5a1O88207 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC11.83□□□□□ -0.52
Col5a1O88207 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Gm25700-201ENSMUST00000177693 110 ntBASIC11.83□□□□□ -0.52
Col5a1O88207 Ighv8-10-201ENSMUST00000199579 358 ntBASIC11.83□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 54.5 ms