Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm34655-202ENSMUST00000215259 877 ntTSL 3 BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Gm40761-201ENSMUST00000219123 1153 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 CT025553.1-201ENSMUST00000226292 299 ntBASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Gm14585-201ENSMUST00000120713 634 ntBASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Aknaos-201ENSMUST00000144095 1104 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Rprl1-201ENSMUST00000158050 327 ntBASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Gm42511-201ENSMUST00000196160 234 ntBASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Ftl1-204ENSMUST00000210864 503 ntTSL 5 BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 CT010478.1-201ENSMUST00000220747 2787 ntBASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Rps10-ps1-201ENSMUST00000074353 495 ntBASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Mmp7-201ENSMUST00000018767 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Mpv17-206ENSMUST00000201353 846 ntAPPRIS P3 TSL 3 BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Tex29-205ENSMUST00000209692 884 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Lgi3-203ENSMUST00000226548 1001 ntBASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Gm5513-201ENSMUST00000072982 1218 ntBASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Ifitm2-201ENSMUST00000081649 655 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Mir339-201ENSMUST00000083659 96 ntBASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Pex3-207ENSMUST00000170376 1381 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Scn4aQ9ER60 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Gm37305-201ENSMUST00000195714 4279 ntBASIC17.68■□□□□ 0.42
Scn4aQ9ER60 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 5530401A14Rik-201ENSMUST00000021044 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Krtap4-9-201ENSMUST00000105059 1059 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Mfsd11-212ENSMUST00000153084 1194 ntTSL 5 BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Cd63-ps-202ENSMUST00000154992 717 ntBASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Gm8100-201ENSMUST00000182906 988 ntBASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Rbp2-202ENSMUST00000187905 611 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Gm29410-201ENSMUST00000188383 694 ntBASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Hddc3-201ENSMUST00000032747 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 E330011O21Rik-202ENSMUST00000209498 1403 ntTSL 5 BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Tmed9-203ENSMUST00000224741 1450 ntBASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Clic3-201ENSMUST00000102918 791 ntAPPRIS ALT1 TSL 3 BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Polr2j-203ENSMUST00000111129 474 ntTSL 3 BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Gm11956-201ENSMUST00000119525 512 ntBASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Gm13019-201ENSMUST00000120000 276 ntBASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Gm12783-201ENSMUST00000121425 397 ntBASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Gm15409-201ENSMUST00000135240 520 ntTSL 2 BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Gm23045-201ENSMUST00000175041 96 ntBASIC17.68■□□□□ 0.42
Scn4aQ9ER60 A930005H10Rik-204ENSMUST00000185681 625 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 A930005H10Rik-206ENSMUST00000188260 739 ntTSL 2 BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 AC153954.1-201ENSMUST00000216959 255 ntBASIC17.68■□□□□ 0.42
Scn4aQ9ER60 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Scn4aQ9ER60 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms