Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cpsf1Q9EPU4 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cpsf1Q9EPU4 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Gm3756-201ENSMUST00000169182 1355 ntBASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Gm15897-201ENSMUST00000117770 1486 ntBASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Gm6023-201ENSMUST00000118217 606 ntBASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cpsf1Q9EPU4 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Gm14921-201ENSMUST00000118643 908 ntBASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Gm13297-201ENSMUST00000120205 934 ntBASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cpsf1Q9EPU4 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Gm5385-201ENSMUST00000118988 1559 ntBASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Gm21769-201ENSMUST00000211922 111 ntBASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Gm18041-201ENSMUST00000218210 618 ntBASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Gm9368-201ENSMUST00000219348 831 ntBASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cpsf1Q9EPU4 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cpsf1Q9EPU4 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 90.5 ms