Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Usp40Q8BWR4 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 Snord83b-201ENSMUST00000104546 94 ntBASIC18.21■□□□□ 0.51
Usp40Q8BWR4 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 Gm27243-201ENSMUST00000183964 521 ntBASIC18.21■□□□□ 0.51
Usp40Q8BWR4 Gm6621-201ENSMUST00000193251 772 ntBASIC18.21■□□□□ 0.51
Usp40Q8BWR4 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC18.21■□□□□ 0.51
Usp40Q8BWR4 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC18.21■□□□□ 0.51
Usp40Q8BWR4 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usp40Q8BWR4 AC154725.1-201ENSMUST00000224826 1961 ntBASIC18.21■□□□□ 0.5
Usp40Q8BWR4 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Gm22323-201ENSMUST00000103832 109 ntBASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Gm2991-201ENSMUST00000173338 480 ntBASIC18.2■□□□□ 0.5
Usp40Q8BWR4 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Gm37259-201ENSMUST00000193903 849 ntBASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 AC132384.14-201ENSMUST00000219346 1147 ntBASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Usp40Q8BWR4 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Gm5637-201ENSMUST00000153890 1119 ntBASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Gm24548-201ENSMUST00000158650 108 ntBASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Mospd4-201ENSMUST00000180618 576 ntBASIC18.19■□□□□ 0.5
Usp40Q8BWR4 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Gm15897-201ENSMUST00000117770 1486 ntBASIC18.19■□□□□ 0.5
Usp40Q8BWR4 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usp40Q8BWR4 Gm38157-201ENSMUST00000194178 1698 ntBASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Gm5466-201ENSMUST00000119395 1890 ntBASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms