Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trim56Q80VI1 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Gm37795-201ENSMUST00000194216 2459 ntBASIC15.73■□□□□ 0.11
Trim56Q80VI1 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Gm4984-201ENSMUST00000115987 360 ntBASIC15.73■□□□□ 0.11
Trim56Q80VI1 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC15.73■□□□□ 0.11
Trim56Q80VI1 AC122459.1-201ENSMUST00000228373 885 ntBASIC15.73■□□□□ 0.11
Trim56Q80VI1 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Gm25857-201ENSMUST00000082788 129 ntBASIC15.73■□□□□ 0.11
Trim56Q80VI1 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Gm14371-201ENSMUST00000138925 1518 ntBASIC15.73■□□□□ 0.11
Trim56Q80VI1 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim56Q80VI1 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC15.73■□□□□ 0.11
Trim56Q80VI1 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Gm13369-201ENSMUST00000119442 987 ntBASIC15.72■□□□□ 0.11
Trim56Q80VI1 Gm13123-201ENSMUST00000122173 492 ntBASIC15.72■□□□□ 0.11
Trim56Q80VI1 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC15.72■□□□□ 0.11
Trim56Q80VI1 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Trim56Q80VI1 AC122305.4-201ENSMUST00000216159 1206 ntBASIC15.72■□□□□ 0.11
Trim56Q80VI1 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 AC122314.1-201ENSMUST00000223056 2239 ntBASIC15.72■□□□□ 0.11
Trim56Q80VI1 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim56Q80VI1 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim56Q80VI1 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim56Q80VI1 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Trim56Q80VI1 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC15.71■□□□□ 0.11
Trim56Q80VI1 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim56Q80VI1 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Trim56Q80VI1 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Trim56Q80VI1 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim56Q80VI1 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim56Q80VI1 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC15.71■□□□□ 0.11
Trim56Q80VI1 Gm11618-201ENSMUST00000117946 267 ntBASIC15.71■□□□□ 0.11
Trim56Q80VI1 Gm11425-201ENSMUST00000119608 498 ntBASIC15.71■□□□□ 0.11
Trim56Q80VI1 Gm11978-201ENSMUST00000122315 466 ntBASIC15.71■□□□□ 0.11
Trim56Q80VI1 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim56Q80VI1 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC15.71■□□□□ 0.11
Trim56Q80VI1 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim56Q80VI1 Gm29649-201ENSMUST00000185649 419 ntBASIC15.71■□□□□ 0.11
Trim56Q80VI1 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Trim56Q80VI1 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC15.71■□□□□ 0.11
Trim56Q80VI1 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC15.71■□□□□ 0.11
Trim56Q80VI1 Gm9396-201ENSMUST00000076703 567 ntBASIC15.71■□□□□ 0.11
Trim56Q80VI1 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim56Q80VI1 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim56Q80VI1 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim56Q80VI1 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 72.8 ms