Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx1P18111 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx1P18111 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx1P18111 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx1P18111 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC10.82□□□□□ -0.68
Cdx1P18111 Fip1l1-204ENSMUST00000113536 4769 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx1P18111 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx1P18111 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx1P18111 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
Cdx1P18111 AC159621.2-201ENSMUST00000223519 1326 ntBASIC10.82□□□□□ -0.68
Cdx1P18111 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx1P18111 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx1P18111 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC10.81□□□□□ -0.68
Cdx1P18111 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Cdx1P18111 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Cdx1P18111 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC10.81□□□□□ -0.68
Cdx1P18111 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC10.81□□□□□ -0.68
Cdx1P18111 Gm6973-201ENSMUST00000117080 721 ntBASIC10.81□□□□□ -0.68
Cdx1P18111 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC10.81□□□□□ -0.68
Cdx1P18111 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Cdx1P18111 Gm27622-201ENSMUST00000183779 60 ntBASIC10.81□□□□□ -0.68
Cdx1P18111 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Wdyhv1-206ENSMUST00000227142 786 ntBASIC10.81□□□□□ -0.68
Cdx1P18111 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC10.81□□□□□ -0.68
Cdx1P18111 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Cdx1P18111 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC10.81□□□□□ -0.68
Cdx1P18111 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Cdx1P18111 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Gm45242-201ENSMUST00000210666 2129 ntBASIC10.81□□□□□ -0.68
Cdx1P18111 Gm7104-201ENSMUST00000179741 2532 ntBASIC10.81□□□□□ -0.68
Cdx1P18111 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx1P18111 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC10.8□□□□□ -0.68
Cdx1P18111 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Cdx1P18111 Gm13127-201ENSMUST00000118978 1389 ntBASIC10.8□□□□□ -0.68
Cdx1P18111 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
Cdx1P18111 Ighg1-202ENSMUST00000194304 2482 ntAPPRIS P5 BASIC10.8□□□□□ -0.68
Cdx1P18111 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Cdx1P18111 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC10.8□□□□□ -0.68
Cdx1P18111 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
Cdx1P18111 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 Gm16026-204ENSMUST00000162652 683 ntBASIC10.8□□□□□ -0.68
Cdx1P18111 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
Cdx1P18111 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 CT010506.4-201ENSMUST00000225457 351 ntBASIC10.8□□□□□ -0.68
Cdx1P18111 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 AC123738.2-201ENSMUST00000223791 1899 ntBASIC10.8□□□□□ -0.68
Cdx1P18111 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC10.8□□□□□ -0.68
Cdx1P18111 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC10.8□□□□□ -0.68
Cdx1P18111 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 AC154767.3-201ENSMUST00000225150 1342 ntBASIC10.8□□□□□ -0.68
Cdx1P18111 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC10.8□□□□□ -0.68
Cdx1P18111 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC10.8□□□□□ -0.68
Cdx1P18111 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Cdx1P18111 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC10.79□□□□□ -0.68
Cdx1P18111 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC10.79□□□□□ -0.68
Cdx1P18111 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC10.79□□□□□ -0.68
Cdx1P18111 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Cdx1P18111 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC10.79□□□□□ -0.68
Cdx1P18111 Gm43721-201ENSMUST00000199677 2313 ntBASIC10.79□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms