Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm37827-201ENSMUST00000194486 1542 ntBASIC15.43■□□□□ 0.06
Col1a1P11087 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC15.43■□□□□ 0.06
Col1a1P11087 Gm8712-201ENSMUST00000221090 701 ntBASIC15.43■□□□□ 0.06
Col1a1P11087 AC154680.1-201ENSMUST00000224376 859 ntBASIC15.43■□□□□ 0.06
Col1a1P11087 Daam2-202ENSMUST00000224595 1926 ntBASIC15.43■□□□□ 0.06
Col1a1P11087 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col1a1P11087 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Col1a1P11087 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Col1a1P11087 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Col1a1P11087 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col1a1P11087 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC15.43■□□□□ 0.06
Col1a1P11087 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col1a1P11087 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col1a1P11087 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Col1a1P11087 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Col1a1P11087 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col1a1P11087 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC15.42■□□□□ 0.06
Col1a1P11087 Gm43908-201ENSMUST00000205074 1472 ntBASIC15.42■□□□□ 0.06
Col1a1P11087 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col1a1P11087 Gm3287-205ENSMUST00000228893 1332 ntBASIC15.42■□□□□ 0.06
Col1a1P11087 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Col1a1P11087 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
Col1a1P11087 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
Col1a1P11087 Gm12058-201ENSMUST00000118614 437 ntBASIC15.42■□□□□ 0.06
Col1a1P11087 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC15.42■□□□□ 0.06
Col1a1P11087 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Col1a1P11087 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Col1a1P11087 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC15.42■□□□□ 0.06
Col1a1P11087 Gm38092-201ENSMUST00000195600 653 ntBASIC15.42■□□□□ 0.06
Col1a1P11087 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Col1a1P11087 CT009718.3-201ENSMUST00000221116 367 ntBASIC15.42■□□□□ 0.06
Col1a1P11087 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
Col1a1P11087 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Col1a1P11087 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col1a1P11087 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Col1a1P11087 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Col1a1P11087 CT009713.10-201ENSMUST00000225013 1986 ntBASIC15.42■□□□□ 0.06
Col1a1P11087 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col1a1P11087 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col1a1P11087 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col1a1P11087 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Col1a1P11087 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col1a1P11087 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col1a1P11087 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC15.41■□□□□ 0.06
Col1a1P11087 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC15.41■□□□□ 0.06
Col1a1P11087 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Col1a1P11087 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC15.41■□□□□ 0.06
Col1a1P11087 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC15.41■□□□□ 0.06
Col1a1P11087 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC15.41■□□□□ 0.06
Col1a1P11087 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC15.41■□□□□ 0.06
Col1a1P11087 AC153974.2-201ENSMUST00000218577 1025 ntBASIC15.41■□□□□ 0.06
Col1a1P11087 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Col1a1P11087 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Col1a1P11087 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Col1a1P11087 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col1a1P11087 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC15.4■□□□□ 0.06
Col1a1P11087 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC15.4■□□□□ 0.06
Col1a1P11087 Gm14267-206ENSMUST00000226870 1209 ntBASIC15.4■□□□□ 0.06
Col1a1P11087 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Col1a1P11087 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Col1a1P11087 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Gm43273-201ENSMUST00000199649 2594 ntBASIC15.4■□□□□ 0.06
Col1a1P11087 Gm7789-202ENSMUST00000211273 1400 ntBASIC15.4■□□□□ 0.06
Col1a1P11087 Gm43056-201ENSMUST00000197865 2791 ntBASIC15.4■□□□□ 0.06
Col1a1P11087 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Col1a1P11087 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms