Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col5a1O88207 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col5a1O88207 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col5a1O88207 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC11.87□□□□□ -0.51
Col5a1O88207 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Col5a1O88207 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col5a1O88207 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col5a1O88207 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col5a1O88207 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC11.87□□□□□ -0.51
Col5a1O88207 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col5a1O88207 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col5a1O88207 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col5a1O88207 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col5a1O88207 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col5a1O88207 Ptges3l-203ENSMUST00000107252 853 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col5a1O88207 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC11.87□□□□□ -0.51
Col5a1O88207 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC11.87□□□□□ -0.51
Col5a1O88207 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col5a1O88207 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC11.87□□□□□ -0.51
Col5a1O88207 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC11.87□□□□□ -0.51
Col5a1O88207 Gm37827-201ENSMUST00000194486 1542 ntBASIC11.87□□□□□ -0.51
Col5a1O88207 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Col5a1O88207 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col5a1O88207 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col5a1O88207 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col5a1O88207 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col5a1O88207 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col5a1O88207 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC11.86□□□□□ -0.51
Col5a1O88207 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC11.86□□□□□ -0.51
Col5a1O88207 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC11.86□□□□□ -0.51
Col5a1O88207 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC11.86□□□□□ -0.51
Col5a1O88207 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC11.86□□□□□ -0.51
Col5a1O88207 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Col5a1O88207 Gm13097-201ENSMUST00000210722 397 ntBASIC11.86□□□□□ -0.51
Col5a1O88207 AC166051.1-201ENSMUST00000214313 210 ntBASIC11.86□□□□□ -0.51
Col5a1O88207 Gm9004-201ENSMUST00000218739 1222 ntBASIC11.86□□□□□ -0.51
Col5a1O88207 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC11.86□□□□□ -0.51
Col5a1O88207 AC131330.1-201ENSMUST00000227814 1015 ntBASIC11.86□□□□□ -0.51
Col5a1O88207 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC11.86□□□□□ -0.51
Col5a1O88207 Sybu-209ENSMUST00000228639 4113 ntBASIC11.86□□□□□ -0.51
Col5a1O88207 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC11.86□□□□□ -0.51
Col5a1O88207 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Col5a1O88207 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Col5a1O88207 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC11.86□□□□□ -0.51
Col5a1O88207 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Gm14371-201ENSMUST00000138925 1518 ntBASIC11.86□□□□□ -0.51
Col5a1O88207 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC11.86□□□□□ -0.51
Col5a1O88207 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Col5a1O88207 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
Col5a1O88207 Gm11667-201ENSMUST00000119828 486 ntBASIC11.86□□□□□ -0.51
Col5a1O88207 Gm11597-201ENSMUST00000121423 964 ntBASIC11.86□□□□□ -0.51
Col5a1O88207 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC11.86□□□□□ -0.51
Col5a1O88207 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
Col5a1O88207 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
Col5a1O88207 Gm9555-201ENSMUST00000200908 583 ntBASIC11.86□□□□□ -0.51
Col5a1O88207 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col5a1O88207 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC11.86□□□□□ -0.51
Col5a1O88207 Gm43273-201ENSMUST00000199649 2594 ntBASIC11.85□□□□□ -0.51
Col5a1O88207 Gm44775-201ENSMUST00000207266 1456 ntBASIC11.85□□□□□ -0.51
Col5a1O88207 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Col5a1O88207 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC11.85□□□□□ -0.51
Col5a1O88207 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col5a1O88207 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms