Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trim3Q9R1R2 Gm14752-201ENSMUST00000120719 2075 ntBASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Gm44414-201ENSMUST00000203660 2109 ntBASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Gm42690-201ENSMUST00000197921 1836 ntBASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Gm6912-201ENSMUST00000117218 544 ntBASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Gm15240-201ENSMUST00000118156 720 ntBASIC12.61□□□□□ -0.39
Trim3Q9R1R2 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Gm28631-201ENSMUST00000190740 334 ntBASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trim3Q9R1R2 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 AC154262.2-201ENSMUST00000224310 2293 ntBASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Gm17795-201ENSMUST00000214505 757 ntBASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trim3Q9R1R2 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trim3Q9R1R2 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trim3Q9R1R2 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Trim3Q9R1R2 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trim3Q9R1R2 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms