Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC17.23■□□□□ 0.35
Trim28Q62318 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim28Q62318 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim28Q62318 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim28Q62318 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim28Q62318 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC17.22■□□□□ 0.35
Trim28Q62318 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
Trim28Q62318 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim28Q62318 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim28Q62318 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
Trim28Q62318 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim28Q62318 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim28Q62318 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim28Q62318 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC17.22■□□□□ 0.35
Trim28Q62318 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC17.22■□□□□ 0.35
Trim28Q62318 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC17.22■□□□□ 0.35
Trim28Q62318 Gm6023-201ENSMUST00000118217 606 ntBASIC17.22■□□□□ 0.35
Trim28Q62318 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC17.22■□□□□ 0.35
Trim28Q62318 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC17.22■□□□□ 0.35
Trim28Q62318 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC17.22■□□□□ 0.35
Trim28Q62318 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim28Q62318 Gm45865-201ENSMUST00000211815 945 ntBASIC17.22■□□□□ 0.35
Trim28Q62318 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC17.22■□□□□ 0.35
Trim28Q62318 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC17.22■□□□□ 0.35
Trim28Q62318 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim28Q62318 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
Trim28Q62318 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim28Q62318 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim28Q62318 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim28Q62318 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim28Q62318 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim28Q62318 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim28Q62318 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim28Q62318 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim28Q62318 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Gm44775-201ENSMUST00000207266 1456 ntBASIC17.21■□□□□ 0.35
Trim28Q62318 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC17.21■□□□□ 0.35
Trim28Q62318 Gm22323-201ENSMUST00000103832 109 ntBASIC17.21■□□□□ 0.35
Trim28Q62318 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC17.21■□□□□ 0.35
Trim28Q62318 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC17.21■□□□□ 0.35
Trim28Q62318 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC17.21■□□□□ 0.35
Trim28Q62318 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Gm8738-201ENSMUST00000172606 329 ntBASIC17.21■□□□□ 0.35
Trim28Q62318 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC17.21■□□□□ 0.35
Trim28Q62318 Gm7895-201ENSMUST00000187459 1173 ntBASIC17.21■□□□□ 0.35
Trim28Q62318 Gm38319-201ENSMUST00000194537 1266 ntBASIC17.21■□□□□ 0.35
Trim28Q62318 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC17.21■□□□□ 0.35
Trim28Q62318 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Gm15459-201ENSMUST00000117405 1941 ntBASIC17.21■□□□□ 0.35
Trim28Q62318 Gm8355-201ENSMUST00000177767 1941 ntBASIC17.21■□□□□ 0.35
Trim28Q62318 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim28Q62318 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim28Q62318 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim28Q62318 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
Trim28Q62318 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim28Q62318 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim28Q62318 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim28Q62318 Gm9025-201ENSMUST00000122415 1575 ntBASIC17.2■□□□□ 0.34
Trim28Q62318 AC113060.1-201ENSMUST00000225689 1573 ntBASIC17.2■□□□□ 0.34
Trim28Q62318 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim28Q62318 Gm15897-201ENSMUST00000117770 1486 ntBASIC17.2■□□□□ 0.34
Trim28Q62318 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim28Q62318 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim28Q62318 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC17.2■□□□□ 0.34
Trim28Q62318 Gm13342-201ENSMUST00000121055 207 ntBASIC17.2■□□□□ 0.34
Trim28Q62318 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC17.2■□□□□ 0.34
Trim28Q62318 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim28Q62318 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC17.2■□□□□ 0.34
Trim28Q62318 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim28Q62318 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC17.2■□□□□ 0.34
Trim28Q62318 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC17.2■□□□□ 0.34
Trim28Q62318 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC17.2■□□□□ 0.34
Trim28Q62318 Gm9368-201ENSMUST00000219348 831 ntBASIC17.2■□□□□ 0.34
Trim28Q62318 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim28Q62318 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim28Q62318 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim28Q62318 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Trim28Q62318 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Trim28Q62318 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim28Q62318 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim28Q62318 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim28Q62318 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms