Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col11a1Q61245 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC14.65□□□□□ -0.06
Col11a1Q61245 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Col11a1Q61245 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col11a1Q61245 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC14.65□□□□□ -0.06
Col11a1Q61245 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col11a1Q61245 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col11a1Q61245 Gm6407-201ENSMUST00000176468 549 ntBASIC14.65□□□□□ -0.06
Col11a1Q61245 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC14.65□□□□□ -0.06
Col11a1Q61245 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Col11a1Q61245 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC14.65□□□□□ -0.06
Col11a1Q61245 Gm13812-201ENSMUST00000118061 1347 ntBASIC14.65□□□□□ -0.06
Col11a1Q61245 Gm13810-201ENSMUST00000118584 1347 ntBASIC14.65□□□□□ -0.06
Col11a1Q61245 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col11a1Q61245 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col11a1Q61245 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col11a1Q61245 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col11a1Q61245 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC14.65□□□□□ -0.06
Col11a1Q61245 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col11a1Q61245 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC14.65□□□□□ -0.07
Col11a1Q61245 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC14.65□□□□□ -0.07
Col11a1Q61245 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
Col11a1Q61245 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Gm14665-201ENSMUST00000122294 557 ntBASIC14.64□□□□□ -0.07
Col11a1Q61245 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC14.64□□□□□ -0.07
Col11a1Q61245 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC14.64□□□□□ -0.07
Col11a1Q61245 Gm43058-201ENSMUST00000197645 625 ntBASIC14.64□□□□□ -0.07
Col11a1Q61245 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Col11a1Q61245 Gm7600-201ENSMUST00000209657 785 ntBASIC14.64□□□□□ -0.07
Col11a1Q61245 AC159819.2-201ENSMUST00000216151 342 ntBASIC14.64□□□□□ -0.07
Col11a1Q61245 Gm10752-201ENSMUST00000218348 729 ntBASIC14.64□□□□□ -0.07
Col11a1Q61245 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC14.64□□□□□ -0.07
Col11a1Q61245 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Col11a1Q61245 Gm43823-201ENSMUST00000197391 1808 ntBASIC14.64□□□□□ -0.07
Col11a1Q61245 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC14.64□□□□□ -0.07
Col11a1Q61245 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Gm23949-201ENSMUST00000104027 127 ntBASIC14.64□□□□□ -0.07
Col11a1Q61245 Gm12015-201ENSMUST00000117065 843 ntBASIC14.64□□□□□ -0.07
Col11a1Q61245 Gm6506-201ENSMUST00000119775 1136 ntBASIC14.64□□□□□ -0.07
Col11a1Q61245 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC14.64□□□□□ -0.07
Col11a1Q61245 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Gm16296-201ENSMUST00000159905 325 ntBASIC14.64□□□□□ -0.07
Col11a1Q61245 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC14.64□□□□□ -0.07
Col11a1Q61245 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC14.64□□□□□ -0.07
Col11a1Q61245 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Col11a1Q61245 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC14.64□□□□□ -0.07
Col11a1Q61245 Sst-201ENSMUST00000004480 599 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col11a1Q61245 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col11a1Q61245 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col11a1Q61245 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Col11a1Q61245 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col11a1Q61245 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col11a1Q61245 Gm28182-201ENSMUST00000188354 2477 ntBASIC14.63□□□□□ -0.07
Col11a1Q61245 Gm45242-201ENSMUST00000210666 2129 ntBASIC14.63□□□□□ -0.07
Col11a1Q61245 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC14.63□□□□□ -0.07
Col11a1Q61245 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col11a1Q61245 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Col11a1Q61245 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
Col11a1Q61245 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Col11a1Q61245 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col11a1Q61245 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col11a1Q61245 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col11a1Q61245 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col11a1Q61245 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col11a1Q61245 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC14.63□□□□□ -0.07
Col11a1Q61245 Gm6039-201ENSMUST00000121667 1250 ntBASIC14.63□□□□□ -0.07
Col11a1Q61245 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Col11a1Q61245 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col11a1Q61245 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col11a1Q61245 D8Ertd738e-201ENSMUST00000019506 616 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
Col11a1Q61245 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC14.63□□□□□ -0.07
Col11a1Q61245 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col11a1Q61245 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC14.63□□□□□ -0.07
Col11a1Q61245 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col11a1Q61245 Rln1-201ENSMUST00000044143 745 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col11a1Q61245 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col11a1Q61245 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Col11a1Q61245 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col11a1Q61245 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col11a1Q61245 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col11a1Q61245 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms