Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Gm7730-201ENSMUST00000212486 454 ntBASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 AC116503.1-201ENSMUST00000215445 2192 ntBASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Gm42466-201ENSMUST00000202099 1301 ntBASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Gm42748-201ENSMUST00000199354 2341 ntBASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Gm44241-201ENSMUST00000203230 1662 ntBASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Gm25144-201ENSMUST00000179561 110 ntBASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Gm25352-201ENSMUST00000179815 110 ntBASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Gm28630-201ENSMUST00000187806 498 ntBASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Gm37714-201ENSMUST00000194742 342 ntBASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Gm18049-201ENSMUST00000208909 581 ntBASIC13.01□□□□□ -0.33
Col28a1Q2UY11 AC158529.1-201ENSMUST00000223618 239 ntBASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col28a1Q2UY11 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Col28a1Q2UY11 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC13□□□□□ -0.33
Col28a1Q2UY11 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Gm6222-201ENSMUST00000120787 396 ntBASIC13□□□□□ -0.33
Col28a1Q2UY11 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC13□□□□□ -0.33
Col28a1Q2UY11 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Gm8116-201ENSMUST00000182917 1201 ntBASIC13□□□□□ -0.33
Col28a1Q2UY11 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC13□□□□□ -0.33
Col28a1Q2UY11 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC13□□□□□ -0.33
Col28a1Q2UY11 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
Col28a1Q2UY11 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Col28a1Q2UY11 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC13□□□□□ -0.33
Col28a1Q2UY11 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Col28a1Q2UY11 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
Col28a1Q2UY11 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC13□□□□□ -0.33
Col28a1Q2UY11 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col28a1Q2UY11 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 58 ms