Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Col8a1Q00780 Gm13859-201ENSMUST00000119936 1423 ntBASIC11.42□□□□□ -0.58
Col8a1Q00780 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Col8a1Q00780 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col8a1Q00780 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC11.41□□□□□ -0.58
Col8a1Q00780 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Gm43579-201ENSMUST00000202387 1307 ntBASIC11.41□□□□□ -0.58
Col8a1Q00780 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC11.41□□□□□ -0.58
Col8a1Q00780 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC11.41□□□□□ -0.58
Col8a1Q00780 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Gm12715-201ENSMUST00000121430 1128 ntBASIC11.41□□□□□ -0.58
Col8a1Q00780 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC11.41□□□□□ -0.58
Col8a1Q00780 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Gm37922-201ENSMUST00000195596 455 ntBASIC11.41□□□□□ -0.58
Col8a1Q00780 Gm44985-201ENSMUST00000206202 1016 ntBASIC11.41□□□□□ -0.58
Col8a1Q00780 Abhd11os-203ENSMUST00000222613 363 ntBASIC11.41□□□□□ -0.58
Col8a1Q00780 Gm2824-203ENSMUST00000226189 1228 ntBASIC11.41□□□□□ -0.58
Col8a1Q00780 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
Col8a1Q00780 Gm44291-201ENSMUST00000203102 2865 ntBASIC11.41□□□□□ -0.58
Col8a1Q00780 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC11.41□□□□□ -0.58
Col8a1Q00780 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col8a1Q00780 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Gm43509-201ENSMUST00000196551 2594 ntBASIC11.4□□□□□ -0.58
Col8a1Q00780 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Col8a1Q00780 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC11.4□□□□□ -0.58
Col8a1Q00780 Gm16379-201ENSMUST00000161469 348 ntBASIC11.4□□□□□ -0.58
Col8a1Q00780 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC11.4□□□□□ -0.58
Col8a1Q00780 Gm28819-201ENSMUST00000186691 572 ntTSL 5 BASIC11.4□□□□□ -0.58
Col8a1Q00780 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC11.4□□□□□ -0.58
Col8a1Q00780 Gm28840-208ENSMUST00000191514 738 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Gm8762-201ENSMUST00000193486 339 ntBASIC11.4□□□□□ -0.58
Col8a1Q00780 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Col8a1Q00780 Gm7046-201ENSMUST00000221351 977 ntBASIC11.4□□□□□ -0.58
Col8a1Q00780 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Gm24447-201ENSMUST00000083977 338 ntBASIC11.4□□□□□ -0.58
Col8a1Q00780 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Col8a1Q00780 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Col8a1Q00780 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Gm9109-201ENSMUST00000120254 1405 ntBASIC11.4□□□□□ -0.58
Col8a1Q00780 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC11.4□□□□□ -0.58
Col8a1Q00780 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC11.4□□□□□ -0.58
Col8a1Q00780 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col8a1Q00780 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Col8a1Q00780 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Col8a1Q00780 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Col8a1Q00780 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.59
Col8a1Q00780 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Col8a1Q00780 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.59
Col8a1Q00780 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Col8a1Q00780 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.59
Col8a1Q00780 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.59
Col8a1Q00780 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC11.39□□□□□ -0.59
Col8a1Q00780 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms