Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
Shmt1P50431 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Zscan30-202ENSMUST00000224144 1458 ntBASIC14.14□□□□□ -0.15
Shmt1P50431 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Shmt1P50431 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Shmt1P50431 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Gm10156-201ENSMUST00000122364 462 ntBASIC14.14□□□□□ -0.15
Shmt1P50431 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Gm27847-201ENSMUST00000183711 107 ntBASIC14.14□□□□□ -0.15
Shmt1P50431 Gm27375-201ENSMUST00000183799 107 ntBASIC14.14□□□□□ -0.15
Shmt1P50431 AC155237.1-201ENSMUST00000226196 1279 ntBASIC14.14□□□□□ -0.15
Shmt1P50431 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Gm9899-201ENSMUST00000065519 555 ntBASIC14.14□□□□□ -0.15
Shmt1P50431 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Shmt1P50431 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Shmt1P50431 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC14.14□□□□□ -0.15
Shmt1P50431 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shmt1P50431 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shmt1P50431 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC14.13□□□□□ -0.15
Shmt1P50431 Gm11405-201ENSMUST00000118689 1556 ntBASIC14.13□□□□□ -0.15
Shmt1P50431 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shmt1P50431 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shmt1P50431 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Shmt1P50431 Gm28386-201ENSMUST00000189147 1849 ntBASIC14.13□□□□□ -0.15
Shmt1P50431 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shmt1P50431 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Shmt1P50431 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Shmt1P50431 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
Shmt1P50431 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Shmt1P50431 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shmt1P50431 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC14.13□□□□□ -0.15
Shmt1P50431 Gm8835-201ENSMUST00000173096 1169 ntBASIC14.13□□□□□ -0.15
Shmt1P50431 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Shmt1P50431 Gm43630-201ENSMUST00000201550 776 ntBASIC14.13□□□□□ -0.15
Shmt1P50431 Gm44064-201ENSMUST00000204964 1087 ntBASIC14.13□□□□□ -0.15
Shmt1P50431 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC14.13□□□□□ -0.15
Shmt1P50431 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Shmt1P50431 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC14.13□□□□□ -0.15
Shmt1P50431 AC166349.1-201ENSMUST00000220866 695 ntBASIC14.13□□□□□ -0.15
Shmt1P50431 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC14.13□□□□□ -0.15
Shmt1P50431 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shmt1P50431 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Shmt1P50431 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Shmt1P50431 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shmt1P50431 AC096628.2-201ENSMUST00000225443 1413 ntBASIC14.13□□□□□ -0.15
Shmt1P50431 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC14.13□□□□□ -0.15
Shmt1P50431 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC14.13□□□□□ -0.15
Shmt1P50431 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shmt1P50431 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shmt1P50431 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC14.13□□□□□ -0.15
Shmt1P50431 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Shmt1P50431 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shmt1P50431 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shmt1P50431 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shmt1P50431 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shmt1P50431 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Shmt1P50431 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shmt1P50431 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Shmt1P50431 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Shmt1P50431 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Shmt1P50431 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shmt1P50431 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shmt1P50431 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shmt1P50431 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC14.12□□□□□ -0.15
Shmt1P50431 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Shmt1P50431 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shmt1P50431 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shmt1P50431 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shmt1P50431 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC14.12□□□□□ -0.15
Shmt1P50431 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
Shmt1P50431 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC14.12□□□□□ -0.15
Shmt1P50431 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
Shmt1P50431 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms