Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Cops4O88544 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cops4O88544 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cops4O88544 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cops4O88544 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cops4O88544 AC139350.1-201ENSMUST00000227064 1594 ntBASIC12.35□□□□□ -0.43
Cops4O88544 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cops4O88544 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC12.34□□□□□ -0.43
Cops4O88544 Gm45643-201ENSMUST00000211364 1484 ntBASIC12.34□□□□□ -0.43
Cops4O88544 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 Gm6539-201ENSMUST00000119157 1064 ntBASIC12.34□□□□□ -0.43
Cops4O88544 Gm13823-201ENSMUST00000119930 345 ntBASIC12.34□□□□□ -0.43
Cops4O88544 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC12.34□□□□□ -0.43
Cops4O88544 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC12.34□□□□□ -0.43
Cops4O88544 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 Gm2213-201ENSMUST00000197485 688 ntBASIC12.34□□□□□ -0.43
Cops4O88544 Gm43125-201ENSMUST00000201724 730 ntBASIC12.34□□□□□ -0.43
Cops4O88544 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC12.34□□□□□ -0.43
Cops4O88544 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC12.34□□□□□ -0.43
Cops4O88544 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Cops4O88544 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC12.34□□□□□ -0.43
Cops4O88544 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 AC114543.1-201ENSMUST00000226451 1558 ntBASIC12.34□□□□□ -0.43
Cops4O88544 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cops4O88544 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC12.34□□□□□ -0.43
Cops4O88544 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.43
Cops4O88544 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Cops4O88544 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.43
Cops4O88544 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.43
Cops4O88544 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Cops4O88544 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC12.33□□□□□ -0.43
Cops4O88544 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cops4O88544 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cops4O88544 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cops4O88544 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cops4O88544 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Cops4O88544 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cops4O88544 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cops4O88544 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cops4O88544 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cops4O88544 Gm17435-202ENSMUST00000212699 1998 ntBASIC12.33□□□□□ -0.44
Cops4O88544 Gm25287-201ENSMUST00000103846 110 ntBASIC12.33□□□□□ -0.44
Cops4O88544 Gm22918-201ENSMUST00000103855 110 ntBASIC12.33□□□□□ -0.44
Cops4O88544 Gm14822-201ENSMUST00000122247 291 ntBASIC12.33□□□□□ -0.44
Cops4O88544 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC12.33□□□□□ -0.44
Cops4O88544 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cops4O88544 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC12.33□□□□□ -0.44
Cops4O88544 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC12.33□□□□□ -0.44
Cops4O88544 Mir6990-201ENSMUST00000183724 91 ntBASIC12.33□□□□□ -0.44
Cops4O88544 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC12.33□□□□□ -0.44
Cops4O88544 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Cops4O88544 CT943659.1-201ENSMUST00000215459 326 ntBASIC12.33□□□□□ -0.44
Cops4O88544 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Cops4O88544 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cops4O88544 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cops4O88544 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cops4O88544 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cops4O88544 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Cops4O88544 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cops4O88544 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cops4O88544 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Cops4O88544 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cops4O88544 Gm15459-201ENSMUST00000117405 1941 ntBASIC12.33□□□□□ -0.44
Cops4O88544 Gm8355-201ENSMUST00000177767 1941 ntBASIC12.33□□□□□ -0.44
Cops4O88544 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Cops4O88544 Rnf17-202ENSMUST00000223627 2077 ntBASIC12.33□□□□□ -0.44
Cops4O88544 Gm38385-201ENSMUST00000194454 2351 ntBASIC12.33□□□□□ -0.44
Cops4O88544 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cops4O88544 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Gm5422-201ENSMUST00000050717 2721 ntBASIC12.32□□□□□ -0.44
Cops4O88544 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Cops4O88544 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Cops4O88544 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms