Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chd3B1AR17 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Chd3B1AR17 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
Chd3B1AR17 Gm2639-201ENSMUST00000156881 1297 ntBASIC13.09□□□□□ -0.31
Chd3B1AR17 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC13.09□□□□□ -0.31
Chd3B1AR17 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC13.09□□□□□ -0.31
Chd3B1AR17 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC13.09□□□□□ -0.31
Chd3B1AR17 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chd3B1AR17 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chd3B1AR17 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chd3B1AR17 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Chd3B1AR17 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Chd3B1AR17 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Chd3B1AR17 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Chd3B1AR17 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chd3B1AR17 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Chd3B1AR17 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC13.08□□□□□ -0.31
Chd3B1AR17 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
Chd3B1AR17 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
Chd3B1AR17 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC13.08□□□□□ -0.31
Chd3B1AR17 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Chd3B1AR17 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Zscan30-202ENSMUST00000224144 1458 ntBASIC13.08□□□□□ -0.32
Chd3B1AR17 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC13.08□□□□□ -0.32
Chd3B1AR17 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC13.08□□□□□ -0.32
Chd3B1AR17 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Gm2824-203ENSMUST00000226189 1228 ntBASIC13.08□□□□□ -0.32
Chd3B1AR17 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC13.08□□□□□ -0.32
Chd3B1AR17 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Chd3B1AR17 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Gm5187-201ENSMUST00000117317 991 ntBASIC13.08□□□□□ -0.32
Chd3B1AR17 Gm1335-201ENSMUST00000121653 386 ntBASIC13.08□□□□□ -0.32
Chd3B1AR17 Gm6161-201ENSMUST00000121942 1102 ntBASIC13.08□□□□□ -0.32
Chd3B1AR17 Gm11978-201ENSMUST00000122315 466 ntBASIC13.08□□□□□ -0.32
Chd3B1AR17 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Chd3B1AR17 Gm6254-201ENSMUST00000168178 1072 ntBASIC13.08□□□□□ -0.32
Chd3B1AR17 Gm6153-201ENSMUST00000172004 1058 ntBASIC13.08□□□□□ -0.32
Chd3B1AR17 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Chd3B1AR17 Mir8109-201ENSMUST00000184375 117 ntBASIC13.08□□□□□ -0.32
Chd3B1AR17 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC13.08□□□□□ -0.32
Chd3B1AR17 Gm5641-202ENSMUST00000198699 1080 ntBASIC13.08□□□□□ -0.32
Chd3B1AR17 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC13.08□□□□□ -0.32
Chd3B1AR17 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chd3B1AR17 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Chd3B1AR17 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC13.07□□□□□ -0.32
Chd3B1AR17 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Chd3B1AR17 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Chd3B1AR17 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Chd3B1AR17 Gm12384-201ENSMUST00000119228 919 ntBASIC13.07□□□□□ -0.32
Chd3B1AR17 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC13.07□□□□□ -0.32
Chd3B1AR17 Gm37922-201ENSMUST00000195596 455 ntBASIC13.07□□□□□ -0.32
Chd3B1AR17 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC13.07□□□□□ -0.32
Chd3B1AR17 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC13.07□□□□□ -0.32
Chd3B1AR17 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Gm8793-201ENSMUST00000183069 1303 ntBASIC13.07□□□□□ -0.32
Chd3B1AR17 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chd3B1AR17 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms