Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Gm8399-201ENSMUST00000082300 1117 ntBASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Gm10339-203ENSMUST00000225409 1671 ntBASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC14.2□□□□□ -0.14
Sf3b1Q99NB9 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Gm11618-201ENSMUST00000117946 267 ntBASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Gm1335-201ENSMUST00000121653 386 ntBASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Gm10729-202ENSMUST00000193403 1375 ntBASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sf3b1Q99NB9 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Gm23931-201ENSMUST00000103842 109 ntBASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Gm27682-201ENSMUST00000183930 110 ntBASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Gm2824-203ENSMUST00000226189 1228 ntBASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sf3b1Q99NB9 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms