Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sh3rf1Q69ZI1 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Sh3rf1Q69ZI1 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC13.62□□□□□ -0.23
Sh3rf1Q69ZI1 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Sh3rf1Q69ZI1 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Sh3rf1Q69ZI1 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sh3rf1Q69ZI1 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Gm12091-201ENSMUST00000146791 830 ntBASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Gm8515-201ENSMUST00000194852 576 ntBASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Gm44608-201ENSMUST00000206827 855 ntBASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 AC132467.2-202ENSMUST00000227726 559 ntBASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Gm6180-201ENSMUST00000065243 498 ntBASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Rubie-203ENSMUST00000227803 2430 ntBASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sh3rf1Q69ZI1 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Gm27194-201ENSMUST00000175753 2936 ntBASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 AC121804.3-201ENSMUST00000223420 295 ntBASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC13.6□□□□□ -0.23
Sh3rf1Q69ZI1 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Gm22189-201ENSMUST00000103822 86 ntBASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Gm6912-201ENSMUST00000117218 544 ntBASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Gm28631-201ENSMUST00000190740 334 ntBASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sh3rf1Q69ZI1 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms