Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm15429-201ENSMUST00000151268 798 ntBASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Gm29608-201ENSMUST00000190444 463 ntBASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Arhgef33-209ENSMUST00000225223 714 ntBASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 AC155252.1-201ENSMUST00000226462 1208 ntBASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Gm42928-201ENSMUST00000197338 3339 ntBASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Gm7899-201ENSMUST00000192935 1897 ntBASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Gm8775-201ENSMUST00000170943 1327 ntBASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 AC154262.2-201ENSMUST00000224310 2293 ntBASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3bQ3ULL6 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Gm27701-201ENSMUST00000184498 110 ntBASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Gm7063-201ENSMUST00000186840 981 ntBASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Gm6983-201ENSMUST00000214912 628 ntBASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 AC159006.1-201ENSMUST00000226396 258 ntBASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Gm38346-201ENSMUST00000192379 2639 ntBASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3bQ3ULL6 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Upf3bQ3ULL6 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC14.33□□□□□ -0.11
Upf3bQ3ULL6 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Upf3bQ3ULL6 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Gm4782-201ENSMUST00000168705 2046 ntBASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Gm28911-201ENSMUST00000188837 117 ntBASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC14.33□□□□□ -0.12
Upf3bQ3ULL6 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms