Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Smim8-204ENSMUST00000108133 935 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col17a1Q07563 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Col17a1Q07563 C330019F10Rik-201ENSMUST00000149428 459 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Col17a1Q07563 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Col17a1Q07563 Gm17798-201ENSMUST00000182282 1035 ntBASIC20.08■□□□□ 0.81
Col17a1Q07563 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col17a1Q07563 Gm6855-201ENSMUST00000206307 790 ntBASIC20.08■□□□□ 0.81
Col17a1Q07563 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Col17a1Q07563 Rps10-ps1-201ENSMUST00000074353 495 ntBASIC20.08■□□□□ 0.81
Col17a1Q07563 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC20.08■□□□□ 0.8
Col17a1Q07563 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Col17a1Q07563 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
Col17a1Q07563 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col17a1Q07563 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col17a1Q07563 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Col17a1Q07563 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col17a1Q07563 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col17a1Q07563 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Col17a1Q07563 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col17a1Q07563 Gm24891-201ENSMUST00000104391 136 ntBASIC20.07■□□□□ 0.8
Col17a1Q07563 Gm11783-201ENSMUST00000119549 885 ntBASIC20.07■□□□□ 0.8
Col17a1Q07563 1700057H21Rik-202ENSMUST00000154530 506 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Col17a1Q07563 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC20.07■□□□□ 0.8
Col17a1Q07563 Mir7677-201ENSMUST00000184226 67 ntBASIC20.07■□□□□ 0.8
Col17a1Q07563 Gm29410-201ENSMUST00000188383 694 ntBASIC20.07■□□□□ 0.8
Col17a1Q07563 Gm43962-201ENSMUST00000203898 190 ntBASIC20.07■□□□□ 0.8
Col17a1Q07563 Gm2875-201ENSMUST00000211333 360 ntBASIC20.07■□□□□ 0.8
Col17a1Q07563 Gm18499-201ENSMUST00000220808 1021 ntBASIC20.07■□□□□ 0.8
Col17a1Q07563 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Col17a1Q07563 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC20.07■□□□□ 0.8
Col17a1Q07563 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Col17a1Q07563 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
Col17a1Q07563 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Col17a1Q07563 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col17a1Q07563 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Col17a1Q07563 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Col17a1Q07563 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col17a1Q07563 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col17a1Q07563 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
Col17a1Q07563 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col17a1Q07563 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Col17a1Q07563 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col17a1Q07563 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Col17a1Q07563 Gm23255-201ENSMUST00000102244 110 ntBASIC20.06■□□□□ 0.8
Col17a1Q07563 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col17a1Q07563 Gm13700-201ENSMUST00000118624 1128 ntBASIC20.06■□□□□ 0.8
Col17a1Q07563 Gm15595-201ENSMUST00000120840 961 ntBASIC20.06■□□□□ 0.8
Col17a1Q07563 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Col17a1Q07563 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
Col17a1Q07563 Gm15744-201ENSMUST00000161734 213 ntBASIC20.06■□□□□ 0.8
Col17a1Q07563 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col17a1Q07563 Gm9507-202ENSMUST00000180157 654 ntBASIC20.06■□□□□ 0.8
Col17a1Q07563 Gm6644-201ENSMUST00000186507 951 ntBASIC20.06■□□□□ 0.8
Col17a1Q07563 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC20.06■□□□□ 0.8
Col17a1Q07563 Gm45135-201ENSMUST00000206787 1184 ntBASIC20.06■□□□□ 0.8
Col17a1Q07563 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC20.06■□□□□ 0.8
Col17a1Q07563 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Col17a1Q07563 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col17a1Q07563 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col17a1Q07563 Gm5641-201ENSMUST00000091130 1488 ntBASIC20.06■□□□□ 0.8
Col17a1Q07563 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Col17a1Q07563 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
Col17a1Q07563 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col17a1Q07563 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC20.06■□□□□ 0.8
Col17a1Q07563 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
Col17a1Q07563 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Col17a1Q07563 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col17a1Q07563 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col17a1Q07563 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col17a1Q07563 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col17a1Q07563 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col17a1Q07563 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col17a1Q07563 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col17a1Q07563 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC20.06■□□□□ 0.8
Col17a1Q07563 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC20.06■□□□□ 0.8
Col17a1Q07563 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
Col17a1Q07563 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC20.06■□□□□ 0.8
Col17a1Q07563 Samd13-202ENSMUST00000125965 1590 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Col17a1Q07563 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col17a1Q07563 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC20.05■□□□□ 0.8
Col17a1Q07563 Gm11956-201ENSMUST00000119525 512 ntBASIC20.05■□□□□ 0.8
Col17a1Q07563 Aamdc-203ENSMUST00000124552 618 ntTSL 3 BASIC20.05■□□□□ 0.8
Col17a1Q07563 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC20.05■□□□□ 0.8
Col17a1Q07563 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC20.05■□□□□ 0.8
Col17a1Q07563 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC20.05■□□□□ 0.8
Col17a1Q07563 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Col17a1Q07563 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Col17a1Q07563 AC027700.1-201ENSMUST00000213965 370 ntTSL 5 BASIC20.05■□□□□ 0.8
Col17a1Q07563 Gm39404-201ENSMUST00000216350 313 ntBASIC20.05■□□□□ 0.8
Col17a1Q07563 AC108416.1-202ENSMUST00000228927 1201 ntBASIC20.05■□□□□ 0.8
Col17a1Q07563 Cdkn3-201ENSMUST00000067426 917 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col17a1Q07563 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC20.05■□□□□ 0.8
Col17a1Q07563 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col17a1Q07563 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Col17a1Q07563 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col17a1Q07563 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col17a1Q07563 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col17a1Q07563 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
Col17a1Q07563 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col17a1Q07563 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms