Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm13297-201ENSMUST00000120205 934 ntBASIC14.79□□□□□ -0.04
Col6a1Q04857 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC14.79□□□□□ -0.04
Col6a1Q04857 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col6a1Q04857 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC14.79□□□□□ -0.04
Col6a1Q04857 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC14.79□□□□□ -0.04
Col6a1Q04857 Gm16379-201ENSMUST00000161469 348 ntBASIC14.79□□□□□ -0.04
Col6a1Q04857 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col6a1Q04857 Gm20482-202ENSMUST00000174729 825 ntBASIC14.79□□□□□ -0.04
Col6a1Q04857 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC14.79□□□□□ -0.04
Col6a1Q04857 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col6a1Q04857 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC14.79□□□□□ -0.04
Col6a1Q04857 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col6a1Q04857 Gm8762-201ENSMUST00000193486 339 ntBASIC14.79□□□□□ -0.04
Col6a1Q04857 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC14.79□□□□□ -0.04
Col6a1Q04857 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC14.79□□□□□ -0.04
Col6a1Q04857 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC14.79□□□□□ -0.04
Col6a1Q04857 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col6a1Q04857 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col6a1Q04857 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col6a1Q04857 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col6a1Q04857 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col6a1Q04857 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col6a1Q04857 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col6a1Q04857 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col6a1Q04857 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Col6a1Q04857 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col6a1Q04857 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col6a1Q04857 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC14.78□□□□□ -0.04
Col6a1Q04857 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Col6a1Q04857 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col6a1Q04857 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col6a1Q04857 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col6a1Q04857 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col6a1Q04857 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Col6a1Q04857 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col6a1Q04857 Gm15370-201ENSMUST00000117158 253 ntBASIC14.78□□□□□ -0.04
Col6a1Q04857 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col6a1Q04857 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
Col6a1Q04857 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col6a1Q04857 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col6a1Q04857 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
Col6a1Q04857 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col6a1Q04857 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col6a1Q04857 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col6a1Q04857 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col6a1Q04857 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col6a1Q04857 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col6a1Q04857 Acot6-202ENSMUST00000222921 3622 ntBASIC14.78□□□□□ -0.04
Col6a1Q04857 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col6a1Q04857 Gm37691-201ENSMUST00000192147 2573 ntBASIC14.78□□□□□ -0.04
Col6a1Q04857 Gm26513-201ENSMUST00000181802 2489 ntBASIC14.77□□□□□ -0.04
Col6a1Q04857 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
Col6a1Q04857 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col6a1Q04857 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Col6a1Q04857 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col6a1Q04857 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC14.77□□□□□ -0.04
Col6a1Q04857 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col6a1Q04857 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col6a1Q04857 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC14.77□□□□□ -0.04
Col6a1Q04857 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col6a1Q04857 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Col6a1Q04857 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC14.77□□□□□ -0.05
Col6a1Q04857 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC14.77□□□□□ -0.05
Col6a1Q04857 Gm4819-201ENSMUST00000182170 1009 ntBASIC14.77□□□□□ -0.05
Col6a1Q04857 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Col6a1Q04857 Gm42929-201ENSMUST00000198374 1286 ntBASIC14.77□□□□□ -0.05
Col6a1Q04857 Gm21769-201ENSMUST00000211922 111 ntBASIC14.77□□□□□ -0.05
Col6a1Q04857 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col6a1Q04857 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col6a1Q04857 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Col6a1Q04857 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC14.77□□□□□ -0.05
Col6a1Q04857 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.05
Col6a1Q04857 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col6a1Q04857 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC14.77□□□□□ -0.05
Col6a1Q04857 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col6a1Q04857 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
Col6a1Q04857 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col6a1Q04857 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
Col6a1Q04857 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col6a1Q04857 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col6a1Q04857 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col6a1Q04857 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Col6a1Q04857 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col6a1Q04857 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col6a1Q04857 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col6a1Q04857 Gm30238-201ENSMUST00000195528 2603 ntBASIC14.76□□□□□ -0.05
Col6a1Q04857 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col6a1Q04857 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col6a1Q04857 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col6a1Q04857 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col6a1Q04857 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC14.76□□□□□ -0.05
Col6a1Q04857 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC14.76□□□□□ -0.05
Col6a1Q04857 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC14.76□□□□□ -0.05
Col6a1Q04857 Gm37986-201ENSMUST00000193285 383 ntBASIC14.76□□□□□ -0.05
Col6a1Q04857 Gm37922-201ENSMUST00000195596 455 ntBASIC14.76□□□□□ -0.05
Col6a1Q04857 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC14.76□□□□□ -0.05
Col6a1Q04857 Gm7046-201ENSMUST00000221351 977 ntBASIC14.76□□□□□ -0.05
Col6a1Q04857 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col6a1Q04857 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col6a1Q04857 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms