Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp4P35123 Mir698-201ENSMUST00000102164 109 ntBASIC14.07□□□□□ -0.16
Usp4P35123 Gm15678-201ENSMUST00000117573 960 ntBASIC14.07□□□□□ -0.16
Usp4P35123 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC14.07□□□□□ -0.16
Usp4P35123 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC14.07□□□□□ -0.16
Usp4P35123 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Usp4P35123 Gm44344-201ENSMUST00000200287 129 ntBASIC14.07□□□□□ -0.16
Usp4P35123 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Usp4P35123 Gm7730-201ENSMUST00000212486 454 ntBASIC14.07□□□□□ -0.16
Usp4P35123 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp4P35123 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp4P35123 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Usp4P35123 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Usp4P35123 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC14.07□□□□□ -0.16
Usp4P35123 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Usp4P35123 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp4P35123 Gm42480-201ENSMUST00000198434 2595 ntBASIC14.07□□□□□ -0.16
Usp4P35123 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Usp4P35123 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Usp4P35123 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp4P35123 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Usp4P35123 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp4P35123 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp4P35123 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC14.07□□□□□ -0.16
Usp4P35123 Gm5422-201ENSMUST00000050717 2721 ntBASIC14.06□□□□□ -0.16
Usp4P35123 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp4P35123 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Usp4P35123 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp4P35123 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp4P35123 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Usp4P35123 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp4P35123 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC14.06□□□□□ -0.16
Usp4P35123 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp4P35123 Gm27680-201ENSMUST00000184192 160 ntBASIC14.06□□□□□ -0.16
Usp4P35123 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC14.06□□□□□ -0.16
Usp4P35123 Gm4971-201ENSMUST00000205991 1108 ntBASIC14.06□□□□□ -0.16
Usp4P35123 Gm18934-201ENSMUST00000216671 1044 ntBASIC14.06□□□□□ -0.16
Usp4P35123 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC14.06□□□□□ -0.16
Usp4P35123 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp4P35123 Gm2423-201ENSMUST00000074863 733 ntBASIC14.06□□□□□ -0.16
Usp4P35123 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp4P35123 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC14.06□□□□□ -0.16
Usp4P35123 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp4P35123 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Usp4P35123 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp4P35123 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Usp4P35123 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp4P35123 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Usp4P35123 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Usp4P35123 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp4P35123 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp4P35123 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp4P35123 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp4P35123 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC14.06□□□□□ -0.16
Usp4P35123 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp4P35123 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp4P35123 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp4P35123 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp4P35123 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Usp4P35123 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp4P35123 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp4P35123 AC122314.1-201ENSMUST00000223056 2239 ntBASIC14.05□□□□□ -0.16
Usp4P35123 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp4P35123 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp4P35123 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Usp4P35123 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp4P35123 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Usp4P35123 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp4P35123 Gm27631-201ENSMUST00000184163 466 ntBASIC14.05□□□□□ -0.16
Usp4P35123 Gtpbp10-211ENSMUST00000198799 648 ntBASIC14.05□□□□□ -0.16
Usp4P35123 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp4P35123 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp4P35123 Mir125a-201ENSMUST00000083545 68 ntBASIC14.05□□□□□ -0.16
Usp4P35123 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Usp4P35123 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp4P35123 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp4P35123 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC14.05□□□□□ -0.16
Usp4P35123 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
Usp4P35123 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Usp4P35123 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
Usp4P35123 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Usp4P35123 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp4P35123 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp4P35123 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp4P35123 AC154747.3-201ENSMUST00000224471 3470 ntBASIC14.05□□□□□ -0.16
Usp4P35123 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Usp4P35123 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp4P35123 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp4P35123 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp4P35123 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Usp4P35123 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC14.04□□□□□ -0.16
Usp4P35123 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC14.04□□□□□ -0.16
Usp4P35123 Ighv1-51-201ENSMUST00000192903 354 ntBASIC14.04□□□□□ -0.16
Usp4P35123 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC14.04□□□□□ -0.16
Usp4P35123 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC14.04□□□□□ -0.16
Usp4P35123 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Usp4P35123 Gm9063-201ENSMUST00000223299 582 ntBASIC14.04□□□□□ -0.16
Usp4P35123 AC166997.1-201ENSMUST00000225122 572 ntBASIC14.04□□□□□ -0.16
Usp4P35123 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usp4P35123 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC14.04□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms