Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
Cdx1P18111 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
Cdx1P18111 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC10.86□□□□□ -0.67
Cdx1P18111 CT030684.1-201ENSMUST00000227292 914 ntBASIC10.86□□□□□ -0.67
Cdx1P18111 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
Cdx1P18111 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC10.86□□□□□ -0.67
Cdx1P18111 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
Cdx1P18111 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC10.86□□□□□ -0.67
Cdx1P18111 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC10.86□□□□□ -0.67
Cdx1P18111 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 CT025626.1-201ENSMUST00000223735 1455 ntBASIC10.86□□□□□ -0.67
Cdx1P18111 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Cdx1P18111 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Cdx1P18111 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC10.85□□□□□ -0.67
Cdx1P18111 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC10.85□□□□□ -0.67
Cdx1P18111 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC10.85□□□□□ -0.67
Cdx1P18111 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC10.85□□□□□ -0.67
Cdx1P18111 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC10.85□□□□□ -0.67
Cdx1P18111 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Cdx1P18111 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Gm6159-201ENSMUST00000191249 1724 ntBASIC10.85□□□□□ -0.67
Cdx1P18111 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC10.85□□□□□ -0.67
Cdx1P18111 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC10.85□□□□□ -0.67
Cdx1P18111 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Gm8584-201ENSMUST00000171982 758 ntBASIC10.85□□□□□ -0.67
Cdx1P18111 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC10.85□□□□□ -0.67
Cdx1P18111 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Cdx1P18111 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
Cdx1P18111 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC10.85□□□□□ -0.67
Cdx1P18111 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC10.85□□□□□ -0.67
Cdx1P18111 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Cdx1P18111 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Cdx1P18111 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
Cdx1P18111 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
Cdx1P18111 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC10.85□□□□□ -0.67
Cdx1P18111 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Cdx1P18111 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Cdx1P18111 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Cdx1P18111 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdx1P18111 Gm6018-201ENSMUST00000216090 1306 ntBASIC10.84□□□□□ -0.67
Cdx1P18111 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Cdx1P18111 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Cdx1P18111 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC10.84□□□□□ -0.67
Cdx1P18111 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
Cdx1P18111 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdx1P18111 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdx1P18111 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdx1P18111 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Cdx1P18111 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Cdx1P18111 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Cdx1P18111 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Cdx1P18111 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC10.84□□□□□ -0.67
Cdx1P18111 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC10.84□□□□□ -0.67
Cdx1P18111 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC10.84□□□□□ -0.67
Cdx1P18111 Gm38114-201ENSMUST00000191877 1232 ntBASIC10.84□□□□□ -0.67
Cdx1P18111 Gm18636-201ENSMUST00000218846 1066 ntBASIC10.84□□□□□ -0.67
Cdx1P18111 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Cdx1P18111 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cdx1P18111 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Cdx1P18111 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms