Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC15.5■□□□□ 0.07
Col1a1P11087 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col1a1P11087 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Col1a1P11087 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col1a1P11087 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC15.5■□□□□ 0.07
Col1a1P11087 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Col1a1P11087 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
Col1a1P11087 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC15.49■□□□□ 0.07
Col1a1P11087 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Col1a1P11087 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col1a1P11087 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col1a1P11087 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col1a1P11087 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col1a1P11087 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Col1a1P11087 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col1a1P11087 Ap5m1-205ENSMUST00000227431 3757 ntBASIC15.48■□□□□ 0.07
Col1a1P11087 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col1a1P11087 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC15.48■□□□□ 0.07
Col1a1P11087 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC15.48■□□□□ 0.07
Col1a1P11087 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col1a1P11087 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Col1a1P11087 Gm25043-201ENSMUST00000158604 212 ntBASIC15.48■□□□□ 0.07
Col1a1P11087 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Col1a1P11087 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
Col1a1P11087 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC15.48■□□□□ 0.07
Col1a1P11087 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col1a1P11087 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col1a1P11087 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col1a1P11087 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Col1a1P11087 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC15.48■□□□□ 0.07
Col1a1P11087 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Col1a1P11087 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Col1a1P11087 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col1a1P11087 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col1a1P11087 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC15.48■□□□□ 0.07
Col1a1P11087 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col1a1P11087 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Col1a1P11087 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Col1a1P11087 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC15.48■□□□□ 0.07
Col1a1P11087 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col1a1P11087 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col1a1P11087 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Col1a1P11087 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col1a1P11087 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col1a1P11087 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col1a1P11087 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col1a1P11087 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
Col1a1P11087 Gm9083-201ENSMUST00000120423 819 ntBASIC15.47■□□□□ 0.07
Col1a1P11087 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC15.47■□□□□ 0.07
Col1a1P11087 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col1a1P11087 Gm5523-201ENSMUST00000180415 997 ntBASIC15.47■□□□□ 0.07
Col1a1P11087 Gm28450-201ENSMUST00000187349 638 ntBASIC15.47■□□□□ 0.07
Col1a1P11087 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC15.47■□□□□ 0.07
Col1a1P11087 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC15.47■□□□□ 0.07
Col1a1P11087 AC166051.1-201ENSMUST00000214313 210 ntBASIC15.47■□□□□ 0.07
Col1a1P11087 AC166095.1-201ENSMUST00000223731 1241 ntBASIC15.47■□□□□ 0.07
Col1a1P11087 AC123665.1-201ENSMUST00000228204 438 ntBASIC15.47■□□□□ 0.07
Col1a1P11087 Gm8385-201ENSMUST00000058999 643 ntBASIC15.47■□□□□ 0.07
Col1a1P11087 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col1a1P11087 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col1a1P11087 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col1a1P11087 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col1a1P11087 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col1a1P11087 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC15.47■□□□□ 0.07
Col1a1P11087 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col1a1P11087 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col1a1P11087 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col1a1P11087 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col1a1P11087 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col1a1P11087 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col1a1P11087 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
Col1a1P11087 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col1a1P11087 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC15.46■□□□□ 0.07
Col1a1P11087 Gm8856-201ENSMUST00000185254 1144 ntBASIC15.46■□□□□ 0.07
Col1a1P11087 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col1a1P11087 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
Col1a1P11087 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Col1a1P11087 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col1a1P11087 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
Col1a1P11087 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col1a1P11087 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms