Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col3a1P08121 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col3a1P08121 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC15.8■□□□□ 0.12
Col3a1P08121 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col3a1P08121 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Col3a1P08121 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col3a1P08121 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC15.79■□□□□ 0.12
Col3a1P08121 Gm15808-201ENSMUST00000119046 604 ntBASIC15.79■□□□□ 0.12
Col3a1P08121 Gm12291-201ENSMUST00000121627 311 ntBASIC15.79■□□□□ 0.12
Col3a1P08121 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Col3a1P08121 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col3a1P08121 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
Col3a1P08121 Ighv1-62-201ENSMUST00000193406 350 ntBASIC15.79■□□□□ 0.12
Col3a1P08121 Gm37466-201ENSMUST00000195692 652 ntBASIC15.79■□□□□ 0.12
Col3a1P08121 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC15.79■□□□□ 0.12
Col3a1P08121 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC15.79■□□□□ 0.12
Col3a1P08121 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col3a1P08121 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC15.79■□□□□ 0.12
Col3a1P08121 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col3a1P08121 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col3a1P08121 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Col3a1P08121 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Col3a1P08121 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col3a1P08121 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col3a1P08121 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col3a1P08121 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col3a1P08121 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col3a1P08121 Gm11222-201ENSMUST00000119005 738 ntBASIC15.78■□□□□ 0.12
Col3a1P08121 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Col3a1P08121 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col3a1P08121 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC15.78■□□□□ 0.12
Col3a1P08121 Gm37489-201ENSMUST00000191883 159 ntBASIC15.78■□□□□ 0.12
Col3a1P08121 Gm38000-201ENSMUST00000192390 1215 ntBASIC15.78■□□□□ 0.12
Col3a1P08121 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC15.78■□□□□ 0.12
Col3a1P08121 Gm19931-201ENSMUST00000198920 368 ntBASIC15.78■□□□□ 0.12
Col3a1P08121 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Col3a1P08121 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
Col3a1P08121 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC15.78■□□□□ 0.12
Col3a1P08121 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Col3a1P08121 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Col3a1P08121 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col3a1P08121 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC15.78■□□□□ 0.12
Col3a1P08121 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col3a1P08121 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col3a1P08121 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col3a1P08121 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Col3a1P08121 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col3a1P08121 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col3a1P08121 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
Col3a1P08121 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
Col3a1P08121 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
Col3a1P08121 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Col3a1P08121 Gm45242-201ENSMUST00000210666 2129 ntBASIC15.78■□□□□ 0.12
Col3a1P08121 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col3a1P08121 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC15.78■□□□□ 0.12
Col3a1P08121 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col3a1P08121 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC15.78■□□□□ 0.12
Col3a1P08121 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col3a1P08121 Gm10608-202ENSMUST00000213924 676 ntBASIC15.78■□□□□ 0.12
Col3a1P08121 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Col3a1P08121 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col3a1P08121 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Col3a1P08121 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col3a1P08121 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col3a1P08121 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col3a1P08121 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col3a1P08121 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Col3a1P08121 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC15.77■□□□□ 0.12
Col3a1P08121 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.12
Col3a1P08121 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Col3a1P08121 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Col3a1P08121 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col3a1P08121 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Col3a1P08121 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Col3a1P08121 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Col3a1P08121 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Col3a1P08121 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Col3a1P08121 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col3a1P08121 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col3a1P08121 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Col3a1P08121 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
Col3a1P08121 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
Col3a1P08121 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC15.77■□□□□ 0.11
Col3a1P08121 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC15.77■□□□□ 0.11
Col3a1P08121 Gm38092-201ENSMUST00000195600 653 ntBASIC15.77■□□□□ 0.11
Col3a1P08121 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
Col3a1P08121 Gm43416-201ENSMUST00000201916 1015 ntBASIC15.77■□□□□ 0.11
Col3a1P08121 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC15.77■□□□□ 0.11
Col3a1P08121 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC15.77■□□□□ 0.11
Col3a1P08121 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC15.77■□□□□ 0.11
Col3a1P08121 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC15.77■□□□□ 0.11
Col3a1P08121 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
Col3a1P08121 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col3a1P08121 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC15.77■□□□□ 0.11
Col3a1P08121 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col3a1P08121 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Col3a1P08121 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col3a1P08121 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Col3a1P08121 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Col3a1P08121 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms