Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lmx1bO88609 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Lmx1bO88609 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lmx1bO88609 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lmx1bO88609 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lmx1bO88609 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lmx1bO88609 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lmx1bO88609 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC12.16□□□□□ -0.46
Lmx1bO88609 Gm11405-201ENSMUST00000118689 1556 ntBASIC12.16□□□□□ -0.46
Lmx1bO88609 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Lmx1bO88609 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lmx1bO88609 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lmx1bO88609 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lmx1bO88609 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lmx1bO88609 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lmx1bO88609 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Lmx1bO88609 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lmx1bO88609 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lmx1bO88609 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lmx1bO88609 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lmx1bO88609 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Lmx1bO88609 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Lmx1bO88609 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Lmx1bO88609 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Lmx1bO88609 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Lmx1bO88609 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC12.15□□□□□ -0.46
Lmx1bO88609 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Lmx1bO88609 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC12.15□□□□□ -0.46
Lmx1bO88609 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC12.15□□□□□ -0.46
Lmx1bO88609 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC12.15□□□□□ -0.46
Lmx1bO88609 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Lmx1bO88609 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC12.15□□□□□ -0.46
Lmx1bO88609 AC166349.1-201ENSMUST00000220866 695 ntBASIC12.15□□□□□ -0.46
Lmx1bO88609 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC12.15□□□□□ -0.46
Lmx1bO88609 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Lmx1bO88609 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Lmx1bO88609 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Gm6091-201ENSMUST00000098307 165 ntBASIC12.15□□□□□ -0.46
Lmx1bO88609 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC12.15□□□□□ -0.46
Lmx1bO88609 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lmx1bO88609 Gm45003-201ENSMUST00000205875 2158 ntBASIC12.15□□□□□ -0.47
Lmx1bO88609 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
Lmx1bO88609 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Lmx1bO88609 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Lmx1bO88609 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.47
Lmx1bO88609 Zscan30-202ENSMUST00000224144 1458 ntBASIC12.14□□□□□ -0.47
Lmx1bO88609 Ankra2-208ENSMUST00000226100 1476 ntBASIC12.14□□□□□ -0.47
Lmx1bO88609 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Lmx1bO88609 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC12.14□□□□□ -0.47
Lmx1bO88609 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Lmx1bO88609 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Gm43364-201ENSMUST00000196046 3274 ntBASIC12.14□□□□□ -0.47
Lmx1bO88609 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC12.14□□□□□ -0.47
Lmx1bO88609 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC12.14□□□□□ -0.47
Lmx1bO88609 Gm11814-201ENSMUST00000119515 929 ntBASIC12.14□□□□□ -0.47
Lmx1bO88609 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Gm27847-201ENSMUST00000183711 107 ntBASIC12.14□□□□□ -0.47
Lmx1bO88609 Gm27375-201ENSMUST00000183799 107 ntBASIC12.14□□□□□ -0.47
Lmx1bO88609 Gm29608-201ENSMUST00000190444 463 ntBASIC12.14□□□□□ -0.47
Lmx1bO88609 Gm44397-201ENSMUST00000195950 113 ntBASIC12.14□□□□□ -0.47
Lmx1bO88609 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lmx1bO88609 Gm7561-201ENSMUST00000211203 886 ntBASIC12.14□□□□□ -0.47
Lmx1bO88609 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC12.14□□□□□ -0.47
Lmx1bO88609 Gm18934-201ENSMUST00000216671 1044 ntBASIC12.14□□□□□ -0.47
Lmx1bO88609 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Lmx1bO88609 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC12.14□□□□□ -0.47
Lmx1bO88609 AC131997.1-201ENSMUST00000228611 1229 ntBASIC12.14□□□□□ -0.47
Lmx1bO88609 Gm24447-201ENSMUST00000083977 338 ntBASIC12.14□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 50.2 ms