Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm10434-201ENSMUST00000101158 471 ntBASIC15.64■□□□□ 0.1
Scn11aQ9R053 Ndufs5-203ENSMUST00000106207 680 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
Scn11aQ9R053 Gm12217-201ENSMUST00000118858 696 ntBASIC15.64■□□□□ 0.1
Scn11aQ9R053 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
Scn11aQ9R053 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
Scn11aQ9R053 Gm12566-201ENSMUST00000121479 359 ntBASIC15.64■□□□□ 0.1
Scn11aQ9R053 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC15.64■□□□□ 0.1
Scn11aQ9R053 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC15.64■□□□□ 0.1
Scn11aQ9R053 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC15.64■□□□□ 0.1
Scn11aQ9R053 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
Scn11aQ9R053 Ndufs5-201ENSMUST00000030401 525 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
Scn11aQ9R053 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.1
Scn11aQ9R053 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Sybu-209ENSMUST00000228639 4113 ntBASIC15.64■□□□□ 0.09
Scn11aQ9R053 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Ap5m1-205ENSMUST00000227431 3757 ntBASIC15.64■□□□□ 0.09
Scn11aQ9R053 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Scn11aQ9R053 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Gm4909-201ENSMUST00000118749 794 ntBASIC15.64■□□□□ 0.09
Scn11aQ9R053 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Gm5523-201ENSMUST00000180415 997 ntBASIC15.64■□□□□ 0.09
Scn11aQ9R053 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Gm8176-201ENSMUST00000191297 1099 ntBASIC15.64■□□□□ 0.09
Scn11aQ9R053 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Gm18556-201ENSMUST00000219748 1031 ntBASIC15.64■□□□□ 0.09
Scn11aQ9R053 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn11aQ9R053 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Gm9025-201ENSMUST00000122415 1575 ntBASIC15.63■□□□□ 0.09
Scn11aQ9R053 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
Scn11aQ9R053 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC15.63■□□□□ 0.09
Scn11aQ9R053 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Scn11aQ9R053 AC113060.1-201ENSMUST00000225689 1573 ntBASIC15.63■□□□□ 0.09
Scn11aQ9R053 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Mir339-201ENSMUST00000083659 96 ntBASIC15.63■□□□□ 0.09
Scn11aQ9R053 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Scn11aQ9R053 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Scn11aQ9R053 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Scn11aQ9R053 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
Scn11aQ9R053 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Scn11aQ9R053 Gm24830-201ENSMUST00000102024 166 ntBASIC15.62■□□□□ 0.09
Scn11aQ9R053 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC15.62■□□□□ 0.09
Scn11aQ9R053 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC15.62■□□□□ 0.09
Scn11aQ9R053 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Scn11aQ9R053 Gm25890-201ENSMUST00000177643 165 ntBASIC15.62■□□□□ 0.09
Scn11aQ9R053 Rnu1b2-201ENSMUST00000178073 165 ntBASIC15.62■□□□□ 0.09
Scn11aQ9R053 Rnu1b1-201ENSMUST00000178250 165 ntBASIC15.62■□□□□ 0.09
Scn11aQ9R053 Gm22614-201ENSMUST00000178300 165 ntBASIC15.62■□□□□ 0.09
Scn11aQ9R053 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC15.62■□□□□ 0.09
Scn11aQ9R053 Gm37489-201ENSMUST00000191883 159 ntBASIC15.62■□□□□ 0.09
Scn11aQ9R053 Gm38092-201ENSMUST00000195600 653 ntBASIC15.62■□□□□ 0.09
Scn11aQ9R053 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Scn11aQ9R053 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC15.62■□□□□ 0.09
Scn11aQ9R053 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Scn11aQ9R053 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Scn11aQ9R053 Gm22042-201ENSMUST00000082989 165 ntBASIC15.62■□□□□ 0.09
Scn11aQ9R053 Gm26232-201ENSMUST00000083360 166 ntBASIC15.62■□□□□ 0.09
Scn11aQ9R053 Gm24136-201ENSMUST00000083374 165 ntBASIC15.62■□□□□ 0.09
Scn11aQ9R053 Rnu1b6-201ENSMUST00000083839 166 ntBASIC15.62■□□□□ 0.09
Scn11aQ9R053 Gm26110-201ENSMUST00000083971 165 ntBASIC15.62■□□□□ 0.09
Scn11aQ9R053 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Scn11aQ9R053 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Scn11aQ9R053 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms