Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC15.06■□□□□ 0
Smc1aQ9CU62 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC15.06■□□□□ 0
Smc1aQ9CU62 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC15.06■□□□□ 0
Smc1aQ9CU62 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Smc1aQ9CU62 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC15.06■□□□□ 0
Smc1aQ9CU62 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC15.06■□□□□ 0
Smc1aQ9CU62 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC15.06■□□□□ 0
Smc1aQ9CU62 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Smc1aQ9CU62 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Smc1aQ9CU62 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC15.06■□□□□ 0
Smc1aQ9CU62 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Smc1aQ9CU62 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Smc1aQ9CU62 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Smc1aQ9CU62 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC15.05■□□□□ 0
Smc1aQ9CU62 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC15.05■□□□□ 0
Smc1aQ9CU62 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC15.05■□□□□ 0
Smc1aQ9CU62 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ 0
Smc1aQ9CU62 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Smc1aQ9CU62 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC15.05■□□□□ 0
Smc1aQ9CU62 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC15.05■□□□□ 0
Smc1aQ9CU62 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
Smc1aQ9CU62 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Smc1aQ9CU62 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Smc1aQ9CU62 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Smc1aQ9CU62 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Smc1aQ9CU62 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Smc1aQ9CU62 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC15.05■□□□□ -0
Smc1aQ9CU62 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC15.05■□□□□ -0
Smc1aQ9CU62 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC15.05■□□□□ -0
Smc1aQ9CU62 Ighv1-25-201ENSMUST00000195638 345 ntBASIC15.05■□□□□ -0
Smc1aQ9CU62 Gm44719-201ENSMUST00000206404 149 ntBASIC15.05■□□□□ -0
Smc1aQ9CU62 AC121598.1-201ENSMUST00000228224 1019 ntBASIC15.05■□□□□ -0
Smc1aQ9CU62 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC15.05■□□□□ -0
Smc1aQ9CU62 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Smc1aQ9CU62 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Smc1aQ9CU62 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC15.05■□□□□ -0
Smc1aQ9CU62 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Smc1aQ9CU62 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Smc1aQ9CU62 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Smc1aQ9CU62 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Smc1aQ9CU62 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Smc1aQ9CU62 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Smc1aQ9CU62 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Smc1aQ9CU62 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Smc1aQ9CU62 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Smc1aQ9CU62 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Smc1aQ9CU62 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Smc1aQ9CU62 Gm7002-201ENSMUST00000221386 2165 ntBASIC15.04■□□□□ -0
Smc1aQ9CU62 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Smc1aQ9CU62 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Smc1aQ9CU62 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC15.04■□□□□ -0
Smc1aQ9CU62 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Smc1aQ9CU62 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Smc1aQ9CU62 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Smc1aQ9CU62 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Smc1aQ9CU62 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC15.04■□□□□ -0
Smc1aQ9CU62 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC15.04■□□□□ -0
Smc1aQ9CU62 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC15.04■□□□□ -0
Smc1aQ9CU62 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Smc1aQ9CU62 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Smc1aQ9CU62 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC15.04■□□□□ -0
Smc1aQ9CU62 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Smc1aQ9CU62 Gm37795-201ENSMUST00000194216 2459 ntBASIC15.04■□□□□ -0
Smc1aQ9CU62 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Smc1aQ9CU62 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC15.04■□□□□ -0
Smc1aQ9CU62 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Smc1aQ9CU62 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Smc1aQ9CU62 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC15.03■□□□□ -0
Smc1aQ9CU62 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Smc1aQ9CU62 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC15.03■□□□□ -0
Smc1aQ9CU62 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC15.03■□□□□ -0
Smc1aQ9CU62 Gm9924-202ENSMUST00000192760 2311 ntBASIC15.03■□□□□ -0
Smc1aQ9CU62 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC15.03■□□□□ -0
Smc1aQ9CU62 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC15.03■□□□□ -0
Smc1aQ9CU62 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Smc1aQ9CU62 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Smc1aQ9CU62 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC15.03■□□□□ -0
Smc1aQ9CU62 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC15.03■□□□□ -0
Smc1aQ9CU62 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Smc1aQ9CU62 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC15.03■□□□□ -0
Smc1aQ9CU62 AC153962.4-201ENSMUST00000217878 242 ntBASIC15.03■□□□□ -0
Smc1aQ9CU62 AC139580.1-202ENSMUST00000223574 928 ntBASIC15.03■□□□□ -0
Smc1aQ9CU62 AC154595.3-201ENSMUST00000224579 384 ntBASIC15.03■□□□□ -0
Smc1aQ9CU62 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC15.03■□□□□ -0
Smc1aQ9CU62 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Smc1aQ9CU62 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Smc1aQ9CU62 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC15.03■□□□□ -0
Smc1aQ9CU62 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Smc1aQ9CU62 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
Smc1aQ9CU62 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
Smc1aQ9CU62 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Smc1aQ9CU62 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC15.03■□□□□ -0
Smc1aQ9CU62 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Smc1aQ9CU62 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Smc1aQ9CU62 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Smc1aQ9CU62 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Smc1aQ9CU62 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Smc1aQ9CU62 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Smc1aQ9CU62 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
Smc1aQ9CU62 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms